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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS16325 and ECOLIN_RS16330 are separated by 218 nucleotides
ECOLIN_RS16330 and ECOLIN_RS16335 are separated by 277 nucleotides
ECOLIN_RS16335 and ECOLIN_RS16340 are separated by 203 nucleotides
ECOLIN_RS16340 and ECOLIN_RS16345 are separated by 135 nucleotides
ECOLIN_RS16325: ECOLIN_RS16325 - prohibitin family protein, at 3,309,223 to 3,310,131
_RS16325
ECOLIN_RS16330: ECOLIN_RS16330 - transketolase, at 3,310,350 to 3,312,341
_RS16330
ECOLIN_RS16335: ECOLIN_RS16335 - metalloprotease LoiP, at 3,312,619 to 3,313,377
_RS16335
ECOLIN_RS16340: ECOLIN_RS16340 - agmatinase, at 3,313,581 to 3,314,501
_RS16340
ECOLIN_RS16345: ECOLIN_RS16345 - hypothetical protein, at 3,314,637 to 3,315,368
_RS16345
Group
Condition
ECOLIN
_RS16325
ECOLIN
_RS16330
ECOLIN
_RS16335
ECOLIN
_RS16340
ECOLIN
_RS16345
phage
TP7
-0.1
-1.5
-0.4
-1.2
-0.3
phage
JK38
-0.3
-1.6
-0.2
-1.1
-0.1
phage
RB51
-0.6
-1.6
+0.0
-1.1
+0.1
carbon source
Casamino-acids
+0.1
-1.8
-0.1
-1.4
+0.1
carbon source
Casamino-acids
+0.2
-1.8
-0.3
-1.4
+0.1
phage
Bas63
-0.2
-1.7
-0.1
-0.8
+0.0
carbon source
Sodium-DL-Lactate
+0.1
-2.1
-0.2
-0.2
-0.1
phage
JK16
-0.3
-1.1
-0.3
-0.7
-0.2
phage
Bas37
-0.0
-1.2
-0.2
-0.7
-0.4
phage
JK16
-0.1
-1.2
-0.1
-0.6
-0.5
phage
TP7
-0.3
-1.3
+0.0
-0.4
-0.4
phage
Bas45
-0.2
-1.5
-0.1
-1.1
+0.5
carbon source
Sodium-DL-Lactate
+0.1
-2.0
-0.4
-0.0
+0.0
phage
EV219
+0.5
-1.5
+0.1
-1.3
-0.1
phage
Bas44
-0.3
-1.6
-0.1
-0.6
+0.5
phage
EV219
+0.4
-1.5
+0.2
-0.8
-0.1
phage
Bas37
+0.4
-1.1
-0.1
-0.4
-0.5
phage
K20
-0.2
-1.2
+0.1
-0.6
+0.3
phage
Bas52
+0.2
-1.4
-0.1
-0.6
+0.4
phage
Bas51
+0.4
-1.3
-0.1
-0.8
+0.2
phage
Bas44
-0.1
-1.1
-0.2
-0.6
+0.4
phage
Bas27
+0.2
-1.4
+0.2
-0.5
+0.1
phage
K20
+0.1
-1.3
-0.1
-0.6
+0.4
no phage control
Control_Nissle
+0.0
-1.3
-0.2
-0.6
+0.8
phage
K25
-0.1
-1.0
-0.1
-0.6
+0.4
phage
Bas22
+0.3
-1.2
+0.2
-0.6
+0.2
no phage control
Control_Nissle
-0.0
-1.1
+0.1
-0.6
+0.8
phage
Bas38
-0.2
+0.9
-0.4
-0.9
-0.2
carbon source
L-Arabinose
-0.4
+1.5
-0.3
-0.3
+0.0
carbon source
D-Glucose
+0.3
+2.0
+0.2
+0.0
-0.0
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