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Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS16140 and ECOLIN_RS16145 are separated by 242 nucleotides
ECOLIN_RS16145 and ECOLIN_RS16150 are separated by 76 nucleotides
ECOLIN_RS16150 and ECOLIN_RS16155 are separated by 163 nucleotides
ECOLIN_RS16155 and ECOLIN_RS16160 are separated by 44 nucleotides
ECOLIN_RS16140: ECOLIN_RS16140 - FAD assembly factor SdhE, at 3,273,408 to 3,273,674
_RS16140
ECOLIN_RS16145: ECOLIN_RS16145 - tRNA-modifying protein YgfZ, at 3,273,917 to 3,274,897
_RS16145
ECOLIN_RS16150: ECOLIN_RS16150 - hemolysin III family protein, at 3,274,974 to 3,275,633
_RS16150
ECOLIN_RS16155: ECOLIN_RS16155 - N(4)-acetylcytidine aminohydrolase, at 3,275,797 to 3,276,108
_RS16155
ECOLIN_RS16160: ECOLIN_RS16160 - 6-phospho-beta-glucosidase BglA, at 3,276,153 to 3,277,586
_RS16160
Group
Condition
ECOLIN
_RS16140
ECOLIN
_RS16145
ECOLIN
_RS16150
ECOLIN
_RS16155
ECOLIN
_RS16160
phage
EV219
-1.1
N.D.
+0.0
-4.6
+0.0
phage
Bas63
-0.5
N.D.
-0.0
-3.3
+0.2
phage
Bas63
-0.1
N.D.
-0.0
-3.2
+0.1
phage
Phi92
-0.8
N.D.
-0.2
-1.8
-0.0
carbon source
Casamino-acids
-1.2
N.D.
-0.3
-0.6
-0.1
phage
Bas45
-0.5
N.D.
+0.2
-1.4
-0.2
phage
K25
-0.3
N.D.
-0.2
-1.4
+0.0
phage
K20
+0.0
N.D.
-0.1
-1.8
-0.0
carbon source
L-Rhamnose
+0.7
N.D.
+0.3
-3.0
+0.2
phage
JK16
-1.0
N.D.
+0.0
-0.8
-0.0
phage
JK38
-1.4
N.D.
-0.1
+0.0
-0.2
carbon source
L-Rhamnose
-0.1
N.D.
-0.4
-0.9
-0.2
phage
P1vir
-1.0
N.D.
-0.0
-0.4
-0.1
phage
K25
-0.4
N.D.
+0.0
-0.9
-0.2
phage
TP7
-1.0
N.D.
-0.1
+0.2
-0.2
carbon source
Casamino-acids
-0.6
N.D.
+0.2
-0.6
+0.1
phage
CEV1
-1.1
N.D.
+0.1
+0.2
-0.0
phage
Bas38
-1.1
N.D.
-0.5
+1.5
+0.1
phage
Bas27
-0.9
N.D.
-0.1
+0.9
+0.1
phage
Phi92
-0.6
N.D.
-0.1
+0.7
+0.1
phage
Bas10
-0.4
N.D.
+0.3
+0.6
-0.0
phage
Bas21
-0.6
N.D.
+0.0
+1.0
+0.1
phage
Bas37
+0.2
N.D.
-0.2
+0.9
-0.1
phage
Bas31
-0.2
N.D.
-0.0
+1.1
-0.0
phage
Bas68
-0.3
N.D.
-0.0
+1.2
-0.0
phage
Bas52
+0.2
N.D.
-0.1
+1.1
-0.0
carbon source
D-Glucose
+2.3
N.D.
-0.2
-0.0
+0.1
carbon source
D-Glucose
+2.4
N.D.
-0.1
+0.2
-0.3
carbon source
L-Arabinose
+4.0
N.D.
-0.2
+0.0
+0.0
carbon source
L-Arabinose
+4.2
N.D.
-0.1
+0.9
-0.2
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