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Cofit
Protein
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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS16030 and ECOLIN_RS16035 are separated by 103 nucleotides
ECOLIN_RS16035 and ECOLIN_RS16040 are separated by 321 nucleotides
ECOLIN_RS16040 and ECOLIN_RS16045 are separated by 2 nucleotides
ECOLIN_RS16045 and ECOLIN_RS16050 are separated by 50 nucleotides
ECOLIN_RS16030: ECOLIN_RS16030 - selenium cofactor biosynthesis protein YqeC, at 3,246,841 to 3,247,611
_RS16030
ECOLIN_RS16035: ECOLIN_RS16035 - molybdenum cofactor cytidylyltransferase, at 3,247,715 to 3,248,293
_RS16035
ECOLIN_RS16040: ECOLIN_RS16040 - putative selenate reductase subunit YgfK, at 3,248,615 to 3,251,713
_RS16040
ECOLIN_RS16045: ECOLIN_RS16045 - putative aminohydrolase SsnA, at 3,251,716 to 3,253,044
_RS16045
ECOLIN_RS16050: ECOLIN_RS16050 - molybdopterin-dependent oxidoreductase FAD-binding subunit, at 3,253,095 to 3,253,874
_RS16050
Group
Condition
ECOLIN
_RS16030
ECOLIN
_RS16035
ECOLIN
_RS16040
ECOLIN
_RS16045
ECOLIN
_RS16050
phage
Bas68
-0.2
-2.5
+0.1
+0.6
-1.2
carbon source
L-Rhamnose
-0.5
+0.4
-0.1
-0.2
-1.9
phage
CEV1
+0.2
-0.1
-0.1
-0.4
-1.9
no phage control
Control_Nissle
+0.2
-1.5
+0.0
+0.6
-1.6
phage
RB68
+0.1
-1.7
+0.1
+0.2
-0.6
phage
Phi92
-0.2
-0.6
+0.0
+0.6
-1.8
phage
RB51
+0.2
-1.1
-0.1
+0.5
-1.3
no phage control
Control_Nissle
+0.2
-0.9
+0.1
-0.1
-1.0
phage
Bas68
+0.2
-1.1
-0.1
-0.3
-0.4
phage
Bas45
+0.2
-0.8
-0.3
+0.1
-0.8
carbon source
D-Glucose
+0.1
-1.3
+0.1
-0.5
+0.2
phage
Bas52
+0.1
-0.6
-0.0
+0.7
-1.7
phage
Bas05
+0.0
-1.1
+0.0
+0.5
-0.8
phage
JK16
+0.0
-0.1
+0.0
+0.2
-1.4
phage
Bas48
-0.1
-0.2
-0.1
+0.3
-1.0
phage
Bas48
+0.2
-0.1
+0.1
+0.1
-1.0
phage
EV219
-0.0
+0.2
+0.0
+0.1
-1.1
phage
Bas51
+0.1
-0.7
-0.1
+0.3
-0.4
phage
Bas22
+0.0
-1.3
+0.0
+0.2
+0.4
phage
Bas52
+0.1
-0.5
+0.0
+0.4
-0.4
carbon source
D-Glucose
-0.2
+0.5
-0.0
+0.2
-0.7
phage
K20
+0.3
-0.9
+0.1
+0.5
-0.3
phage
Bas44
+0.3
-0.7
+0.0
+0.0
+0.4
phage
K25
+0.0
-0.3
-0.0
+0.7
-0.3
phage
K25
-0.1
-0.5
-0.1
+0.4
+0.3
carbon source
L-Rhamnose
-0.3
-1.2
+0.3
+0.5
+1.0
phage
Bas37
-0.3
-0.0
-0.1
+0.4
+0.7
phage
Bas27
-0.3
-0.0
+0.0
+0.3
+1.0
carbon source
Casamino-acids
+0.1
+0.6
+0.0
-0.2
+1.2
carbon source
Sodium-DL-Lactate
-0.0
+0.6
-0.1
+0.2
+0.9
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