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Cofit
Protein
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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS16020 and ECOLIN_RS16025 are separated by 40 nucleotides
ECOLIN_RS16025 and ECOLIN_RS16030 are separated by 47 nucleotides
ECOLIN_RS16030 and ECOLIN_RS16035 are separated by 103 nucleotides
ECOLIN_RS16035 and ECOLIN_RS16040 are separated by 321 nucleotides
ECOLIN_RS16020: ECOLIN_RS16020 - carbamate kinase, at 3,244,195 to 3,245,127
_RS16020
ECOLIN_RS16025: ECOLIN_RS16025 - selenium-dependent molybdenum cofactor biosynthesis protein YqeB, at 3,245,168 to 3,246,793
_RS16025
ECOLIN_RS16030: ECOLIN_RS16030 - selenium cofactor biosynthesis protein YqeC, at 3,246,841 to 3,247,611
_RS16030
ECOLIN_RS16035: ECOLIN_RS16035 - molybdenum cofactor cytidylyltransferase, at 3,247,715 to 3,248,293
_RS16035
ECOLIN_RS16040: ECOLIN_RS16040 - putative selenate reductase subunit YgfK, at 3,248,615 to 3,251,713
_RS16040
Group
Condition
ECOLIN
_RS16020
ECOLIN
_RS16025
ECOLIN
_RS16030
ECOLIN
_RS16035
ECOLIN
_RS16040
phage
Bas68
+0.3
-0.0
-0.2
-2.5
+0.1
phage
P1vir
-0.6
-0.6
-0.1
-0.3
-0.1
phage
Bas22
-0.2
-0.0
+0.0
-1.3
+0.0
phage
Bas45
-0.2
-0.3
+0.2
-0.8
-0.3
phage
RB68
+0.4
-0.2
+0.1
-1.7
+0.1
no phage control
Control_Nissle
-0.1
+0.0
+0.2
-1.5
+0.0
phage
Bas68
-0.2
+0.0
+0.2
-1.1
-0.1
carbon source
L-Arabinose
-0.2
-0.2
-0.0
-0.9
+0.1
phage
Bas05
+0.3
-0.2
+0.0
-1.1
+0.0
phage
RB51
-0.1
+0.1
+0.2
-1.1
-0.1
phage
Bas63
+0.1
-0.1
-0.3
-0.5
-0.1
carbon source
D-Glucose
-0.1
+0.4
+0.1
-1.3
+0.1
carbon source
L-Rhamnose
+0.1
+0.2
-0.3
-1.2
+0.3
no phage control
Control_Nissle
+0.2
-0.3
+0.2
-0.9
+0.1
phage
Bas05
-0.2
-0.1
-0.0
-0.5
+0.1
phage
K25
+0.1
-0.5
+0.0
-0.3
-0.0
phage
Bas44
+0.2
-0.4
+0.3
-0.7
+0.0
phage
K20
+0.1
-0.3
+0.3
-0.9
+0.1
phage
Bas51
+0.1
+0.1
+0.1
-0.7
-0.1
phage
Phi92
-0.0
+0.2
-0.2
-0.6
+0.0
phage
Bas52
+0.3
-0.2
+0.1
-0.6
-0.0
phage
Bas38
+0.2
-0.0
+0.2
-0.6
-0.1
phage
Bas52
+0.4
-0.1
+0.1
-0.5
+0.0
carbon source
L-Rhamnose
+0.2
-0.0
-0.5
+0.4
-0.1
phage
JK16
+0.3
-0.3
+0.0
+0.2
-0.2
carbon source
Sodium-DL-Lactate
-0.1
-0.3
-0.0
+0.6
-0.1
carbon source
D-Glucose
-0.2
+0.1
-0.2
+0.5
-0.0
phage
Bas10
+0.2
-0.3
-0.1
+0.4
+0.0
phage
Bas04
+0.4
-0.1
-0.2
+0.3
+0.1
carbon source
Casamino-acids
+0.1
-0.2
+0.1
+0.6
+0.0
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