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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS16010 and ECOLIN_RS16015 are separated by 53 nucleotides
ECOLIN_RS16015 and ECOLIN_RS16020 are separated by 47 nucleotides
ECOLIN_RS16020 and ECOLIN_RS16025 are separated by 40 nucleotides
ECOLIN_RS16025 and ECOLIN_RS16030 are separated by 47 nucleotides
ECOLIN_RS16010: ECOLIN_RS16010 - YgeY family selenium metabolism-linked hydrolase, at 3,241,497 to 3,242,708
_RS16010
ECOLIN_RS16015: ECOLIN_RS16015 - D-phenylhydantoinase, at 3,242,762 to 3,244,147
_RS16015
ECOLIN_RS16020: ECOLIN_RS16020 - carbamate kinase, at 3,244,195 to 3,245,127
_RS16020
ECOLIN_RS16025: ECOLIN_RS16025 - selenium-dependent molybdenum cofactor biosynthesis protein YqeB, at 3,245,168 to 3,246,793
_RS16025
ECOLIN_RS16030: ECOLIN_RS16030 - selenium cofactor biosynthesis protein YqeC, at 3,246,841 to 3,247,611
_RS16030
Group
Condition
ECOLIN
_RS16010
ECOLIN
_RS16015
ECOLIN
_RS16020
ECOLIN
_RS16025
ECOLIN
_RS16030
phage
P1vir
+0.2
-0.1
-0.6
-0.6
-0.1
carbon source
D-Glucose
-0.1
-0.2
-0.2
+0.1
-0.2
phage
Bas21
-0.2
+0.1
-0.1
-0.4
+0.1
phage
Bas45
-0.1
-0.1
-0.2
-0.3
+0.2
carbon source
Sodium-DL-Lactate
+0.2
-0.0
-0.1
-0.5
+0.0
phage
Bas10
+0.1
-0.2
+0.2
-0.3
-0.1
phage
JK38
+0.2
-0.2
-0.0
-0.4
+0.1
carbon source
D-Glucose
-0.1
-0.5
-0.1
+0.4
+0.1
phage
Bas44
-0.1
-0.2
+0.2
-0.4
+0.3
phage
Bas27
-0.0
+0.1
+0.2
-0.2
-0.3
phage
Phi92
+0.4
-0.5
-0.1
+0.1
+0.0
phage
K25
+0.2
+0.1
+0.1
-0.5
+0.0
phage
TP7
+0.0
-0.1
+0.2
-0.3
+0.2
phage
K20
+0.2
-0.1
+0.1
-0.3
+0.3
phage
Bas04
+0.4
+0.2
-0.1
-0.4
+0.1
phage
RB51
+0.3
+0.0
-0.2
-0.1
+0.2
no phage control
Control_Nissle
+0.2
-0.0
+0.2
-0.3
+0.2
phage
Bas52
+0.2
-0.3
+0.4
-0.1
+0.1
phage
Bas68
+0.2
+0.1
+0.3
-0.0
-0.2
phage
EV219
+0.0
+0.2
+0.4
-0.1
-0.0
phage
Phi92
+0.4
+0.0
-0.0
+0.2
-0.2
phage
Bas37
+0.2
+0.3
-0.0
+0.3
-0.3
phage
CEV1
+0.2
+0.1
+0.2
-0.3
+0.2
no phage control
Control_Nissle
-0.1
+0.4
-0.1
+0.0
+0.2
carbon source
L-Rhamnose
+0.1
+0.7
+0.2
-0.0
-0.5
phage
Bas37
+0.1
+0.2
-0.0
-0.1
+0.3
phage
Bas38
+0.2
+0.2
-0.2
-0.1
+0.4
phage
Bas52
+0.2
+0.3
+0.3
-0.2
+0.1
phage
Bas63
+0.1
+0.1
+0.1
+0.2
+0.3
phage
Bas27
+0.2
+0.2
+0.1
+0.4
-0.0
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