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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS15985 and ECOLIN_RS15990 overlap by 4 nucleotides
ECOLIN_RS15990 and ECOLIN_RS15995 are separated by 39 nucleotides
ECOLIN_RS15995 and ECOLIN_RS16000 are separated by 478 nucleotides
ECOLIN_RS16000 and ECOLIN_RS16005 are separated by 57 nucleotides
ECOLIN_RS15985: ECOLIN_RS15985 - xanthine dehydrogenase FAD-binding subunit XdhB, at 3,235,347 to 3,236,225
_RS15985
ECOLIN_RS15990: ECOLIN_RS15990 - xanthine dehydrogenase iron sulfur-binding subunit XdhC, at 3,236,222 to 3,236,701
_RS15990
ECOLIN_RS15995: ECOLIN_RS15995 - sigma-54-dependent Fis family transcriptional regulator, at 3,236,741 to 3,238,519
_RS15995
ECOLIN_RS16000: ECOLIN_RS16000 - knotted carbamoyltransferase YgeW, at 3,238,998 to 3,240,185
_RS16000
ECOLIN_RS16005: ECOLIN_RS16005 - diaminopropionate ammonia-lyase, at 3,240,243 to 3,241,439
_RS16005
Group
Condition
ECOLIN
_RS15985
ECOLIN
_RS15990
ECOLIN
_RS15995
ECOLIN
_RS16000
ECOLIN
_RS16005
phage
Bas48
-1.4
-0.7
-0.1
-0.2
-0.2
phage
Bas21
-0.7
-0.3
+0.4
-0.4
-0.6
phage
Bas31
+0.1
-0.2
-0.2
-0.2
-0.7
carbon source
L-Arabinose
-0.5
+0.0
+0.2
-0.1
-0.4
phage
Bas22
+0.3
-0.4
-0.3
-0.1
-0.5
phage
Bas31
-1.1
-0.0
+0.2
-0.0
+0.1
phage
Bas27
+0.4
-0.3
-0.2
-0.2
-0.3
phage
Bas21
+0.7
-0.6
+0.3
-0.3
-0.8
no phage control
Control_Nissle
+0.0
+0.1
+0.1
-0.4
-0.5
carbon source
D-Glucose
+0.1
-0.7
-0.3
-0.1
+0.4
phage
Phi92
+0.8
-0.4
-0.2
+0.0
-0.7
carbon source
D-Glucose
-0.3
-0.4
-0.1
+0.0
+0.4
phage
Bas44
-0.9
+0.1
-0.2
+0.1
+0.6
phage
Bas44
-0.4
+0.1
-0.3
-0.1
+0.4
carbon source
L-Rhamnose
-0.9
+0.4
+0.4
-0.3
-0.0
phage
Bas52
-0.7
-0.3
+0.1
+0.1
+0.5
phage
P1vir
-0.3
+0.5
+0.1
-0.1
-0.4
phage
Bas63
-0.5
+0.1
-0.4
+0.1
+0.5
phage
K25
-0.9
+0.1
-0.2
+0.1
+0.8
phage
RB51
-1.0
+0.2
+0.1
+0.2
+0.3
phage
Bas68
-0.6
+0.5
-0.3
-0.0
+0.3
phage
Bas22
-0.2
-0.5
+0.3
+0.2
+0.2
phage
JK16
-0.7
+0.3
+0.4
+0.1
+0.1
phage
CEV1
-0.3
-0.0
+0.3
-0.3
+0.4
phage
Bas27
-0.4
+0.3
+0.2
-0.1
+0.5
phage
RB51
-0.4
+0.2
+0.2
+0.2
+0.3
carbon source
L-Rhamnose
-0.4
+0.1
+0.7
+0.3
-0.1
phage
JK16
+0.6
-0.0
+0.5
-0.5
+0.1
phage
Bas52
+0.2
+0.4
-0.2
+0.2
+0.4
phage
Bas45
+0.1
-0.1
-0.0
+0.2
+0.8
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