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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS15530 and ECOLIN_RS15535 are separated by 20 nucleotides
ECOLIN_RS15535 and ECOLIN_RS15540 are separated by 1 nucleotides
ECOLIN_RS15540 and ECOLIN_RS15545 are separated by 432 nucleotides
ECOLIN_RS15545 and ECOLIN_RS15550 are separated by 17 nucleotides
ECOLIN_RS15530: ECOLIN_RS15530 - glucarate dehydratase, at 3,128,160 to 3,129,502
_RS15530
ECOLIN_RS15535: ECOLIN_RS15535 - enolase C-terminal domain-like protein, at 3,129,523 to 3,130,863
_RS15535
ECOLIN_RS15540: ECOLIN_RS15540 - galactarate/glucarate/glycerate transporter GudP, at 3,130,865 to 3,132,217
_RS15540
ECOLIN_RS15545: ECOLIN_RS15545 - flavodoxin, at 3,132,650 to 3,133,099
_RS15545
ECOLIN_RS15550: ECOLIN_RS15550 - tRNA pseudouridine(65) synthase TruC, at 3,133,117 to 3,133,899
_RS15550
Group
Condition
ECOLIN
_RS15530
ECOLIN
_RS15535
ECOLIN
_RS15540
ECOLIN
_RS15545
ECOLIN
_RS15550
phage
Bas27
-0.6
-0.1
-0.0
-0.1
+0.1
phage
Bas37
+0.3
-0.4
-0.2
+0.0
-0.3
phage
TP7
-0.1
-0.5
+0.1
-0.3
+0.2
phage
K25
-0.2
-0.0
+0.1
-0.6
+0.2
phage
RB51
+0.3
-0.2
+0.0
-0.5
-0.1
phage
Bas37
-0.1
-0.4
-0.1
-0.1
+0.2
carbon source
D-Glucose
-0.1
+0.0
-0.4
-0.4
+0.4
phage
EV219
+0.3
-0.4
-0.2
+0.2
-0.3
phage
TP7
-0.3
-0.5
+0.2
+0.1
+0.3
phage
CEV1
+0.1
-0.6
-0.2
+0.2
+0.2
phage
Bas45
+0.3
-0.6
+0.1
-0.1
+0.1
phage
Bas04
-0.0
-0.4
-0.0
+0.3
+0.2
phage
Bas31
+0.3
-0.3
-0.1
+0.2
-0.0
phage
RB68
+0.2
-0.2
+0.1
-0.3
+0.3
carbon source
L-Rhamnose
+0.1
+0.5
-0.4
-0.0
-0.0
phage
Bas22
-0.3
-0.1
+0.3
+0.4
+0.0
phage
EV219
+0.2
-0.5
+0.2
+0.2
+0.2
phage
RB51
+0.6
-0.3
+0.1
+0.1
-0.0
phage
Bas63
+0.5
+0.0
+0.3
-0.1
-0.2
carbon source
Casamino-acids
+0.3
+0.4
+0.0
-0.1
+0.1
phage
Bas63
+0.6
-0.1
+0.1
-0.0
+0.2
phage
Bas21
+0.1
+0.6
-0.4
+0.2
+0.3
carbon source
D-Glucose
+0.0
+0.5
-0.3
+0.3
+0.4
phage
Bas38
-0.1
+0.6
-0.0
+0.0
+0.5
phage
Bas21
+0.3
+0.1
-0.0
+0.4
+0.2
phage
Bas22
+0.8
+0.2
+0.1
-0.1
+0.0
phage
Bas52
+0.3
+0.2
+0.3
+0.4
-0.0
phage
P1vir
+0.2
+0.2
+0.3
+0.4
+0.1
carbon source
L-Rhamnose
+0.2
+0.6
-0.0
+0.4
+0.4
phage
K25
+0.1
+0.6
+0.1
+0.4
+0.4
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ECOLIN_RS15540
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