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Protein
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Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS15270 and ECOLIN_RS15275 are separated by 285 nucleotides
ECOLIN_RS15275 and ECOLIN_RS15280 are separated by 105 nucleotides
ECOLIN_RS15280 and ECOLIN_RS15285 are separated by 50 nucleotides
ECOLIN_RS15285 and ECOLIN_RS15290 are separated by 195 nucleotides
ECOLIN_RS15270: ECOLIN_RS15270 - nitrous oxide-stimulated promoter family protein, at 3,071,941 to 3,072,285
_RS15270
ECOLIN_RS15275: ECOLIN_RS15275 - DNA mismatch repair protein MutS, at 3,072,571 to 3,075,132
_RS15275
ECOLIN_RS15280: ECOLIN_RS15280 - protein-serine/threonine phosphatase, at 3,075,238 to 3,075,894
_RS15280
ECOLIN_RS15285: ECOLIN_RS15285 - DNA-binding transcriptional repressor YgbI, at 3,075,945 to 3,076,712
_RS15285
ECOLIN_RS15290: ECOLIN_RS15290 - L-threonate dehydrogenase, at 3,076,908 to 3,077,816
_RS15290
Group
Condition
ECOLIN
_RS15270
ECOLIN
_RS15275
ECOLIN
_RS15280
ECOLIN
_RS15285
ECOLIN
_RS15290
phage
Bas63
-0.6
-0.2
N.D.
-0.3
+0.1
phage
Bas68
-0.0
-0.1
N.D.
-0.9
+0.3
phage
Bas68
-0.0
-0.3
N.D.
-0.5
+0.2
phage
P1vir
-0.0
-0.2
N.D.
-0.5
+0.2
phage
K20
-0.3
-0.1
N.D.
-0.6
+0.5
phage
CEV1
-0.6
-0.0
N.D.
-0.0
+0.3
phage
CEV1
-0.5
-0.2
N.D.
-0.1
+0.4
phage
Bas52
-0.6
+0.1
N.D.
-0.2
+0.3
phage
Bas45
-0.6
+0.2
N.D.
+0.0
+0.2
phage
K25
+0.5
-0.0
N.D.
-0.6
+0.1
phage
K20
+0.1
-0.2
N.D.
-0.5
+0.5
no phage control
Control_Nissle
+0.1
-0.2
N.D.
-0.4
+0.5
phage
K25
+0.5
-0.1
N.D.
-0.4
+0.0
carbon source
Casamino-acids
+0.5
-0.0
N.D.
+0.4
-0.8
phage
Bas52
-0.4
-0.1
N.D.
-0.2
+0.7
phage
Bas10
+0.1
-0.2
N.D.
-0.3
+0.4
phage
Bas27
+0.2
-0.2
N.D.
-0.3
+0.5
phage
Bas51
+0.4
-0.3
N.D.
-0.1
+0.1
phage
Phi92
-0.3
-0.4
N.D.
-0.1
+1.0
phage
RB68
+0.2
-0.0
N.D.
-0.4
+0.6
carbon source
L-Rhamnose
-0.1
-0.2
N.D.
+1.4
-0.6
phage
Bas38
-0.4
+0.3
N.D.
+0.2
+0.5
phage
TP7
+0.1
-0.1
N.D.
-0.2
+0.8
phage
Bas04
+0.2
-0.2
N.D.
-0.1
+0.8
phage
Bas37
+0.3
-0.4
N.D.
+0.1
+0.7
carbon source
L-Rhamnose
+0.6
-0.0
N.D.
+0.5
-0.3
no phage control
Control_Nissle
+0.3
-0.1
N.D.
+0.1
+0.5
phage
Bas48
+0.5
-0.2
N.D.
+0.1
+0.6
phage
Bas22
+0.6
-0.2
N.D.
-0.0
+0.8
phage
TP7
+0.6
-0.1
N.D.
+0.1
+0.7
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