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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS15230 and ECOLIN_RS15235 are separated by 211 nucleotides
ECOLIN_RS15235 and ECOLIN_RS15240 are separated by 3 nucleotides
ECOLIN_RS15240 and ECOLIN_RS15245 overlap by 10 nucleotides
ECOLIN_RS15245 and ECOLIN_RS15250 overlap by 1 nucleotides
ECOLIN_RS15230: ECOLIN_RS15230 - formate hydrogenlyase regulator HycA, at 3,064,987 to 3,065,448
_RS15230
ECOLIN_RS15235: ECOLIN_RS15235 - hydrogenase maturation nickel metallochaperone HypA, at 3,065,660 to 3,066,010
_RS15235
ECOLIN_RS15240: ECOLIN_RS15240 - hydrogenase nickel incorporation protein HypB, at 3,066,014 to 3,066,886
_RS15240
ECOLIN_RS15245: ECOLIN_RS15245 - hydrogenase 3 maturation protein HypC, at 3,066,877 to 3,067,149
_RS15245
ECOLIN_RS15250: ECOLIN_RS15250 - hydrogenase formation protein HypD, at 3,067,149 to 3,068,270
_RS15250
Group
Condition
ECOLIN
_RS15230
ECOLIN
_RS15235
ECOLIN
_RS15240
ECOLIN
_RS15245
ECOLIN
_RS15250
phage
K20
+0.2
+0.2
-1.5
-0.2
+0.1
phage
TP7
-0.3
+0.2
-0.3
-0.5
+0.0
phage
Bas27
-0.0
-0.2
+0.7
-1.3
-0.0
phage
K20
+0.2
+0.0
-0.9
+0.1
-0.2
phage
Bas45
-0.7
+0.2
+0.4
-1.0
+0.4
phage
Bas38
-0.2
-0.0
+0.8
-0.8
-0.1
phage
EV219
-0.3
+0.2
+0.3
-0.4
-0.2
phage
Bas31
-0.2
-0.1
+0.8
-0.5
-0.4
carbon source
L-Arabinose
-0.0
-0.1
-0.7
+0.2
+0.3
phage
Bas31
-0.1
+0.1
+0.6
-0.2
-0.5
phage
JK38
-0.5
+0.1
+0.9
-0.5
-0.1
phage
TP7
-0.4
+0.3
+1.2
-0.8
-0.1
phage
K25
-0.0
+0.3
-0.6
+0.3
+0.3
phage
Bas37
-0.0
+0.1
+0.9
-0.5
-0.3
phage
K25
-0.1
+0.2
-0.4
+0.3
+0.3
phage
Bas04
-0.0
-0.2
+1.2
-0.5
-0.2
phage
JK16
+0.0
+0.1
+1.1
-0.3
-0.5
phage
Bas27
-0.1
+0.3
+0.7
-0.5
-0.1
phage
Bas37
-0.3
-0.0
+1.5
-0.6
-0.1
phage
JK16
+0.0
+0.2
+0.7
-0.6
+0.2
phage
Bas22
-0.5
+0.0
+0.4
+0.7
-0.1
phage
Bas63
-0.1
+0.4
+0.8
-0.1
-0.3
carbon source
D-Glucose
-0.1
-0.1
+0.9
-0.1
+0.2
phage
Phi92
-0.0
-0.5
+2.2
-0.7
-0.2
phage
Bas10
-0.0
+0.2
+1.0
-0.0
-0.2
phage
Bas05
-0.0
+0.1
+1.5
-0.4
-0.2
carbon source
Sodium-DL-Lactate
-0.0
-0.3
+0.6
+0.4
+0.2
phage
Phi92
+0.0
-0.0
+1.1
+0.1
+0.1
phage
CEV1
+0.1
+0.2
+1.9
-0.5
+0.0
phage
Bas48
-0.0
+0.2
+0.9
+0.3
+0.4
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