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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS31555 and ECOLIN_RS14695 are separated by 98 nucleotides
ECOLIN_RS14695 and ECOLIN_RS14700 are separated by 42 nucleotides
ECOLIN_RS14700 and ECOLIN_RS14705 are separated by 10 nucleotides
ECOLIN_RS14705 and ECOLIN_RS14710 are separated by 209 nucleotides
ECOLIN_RS31555: ECOLIN_RS31555 - pheA operon leader peptide PheL, at 2,974,160 to 2,974,207
_RS31555
ECOLIN_RS14695: ECOLIN_RS14695 - bifunctional chorismate mutase/prephenate dehydratase, at 2,974,306 to 2,975,466
_RS14695
ECOLIN_RS14700: ECOLIN_RS14700 - bifunctional chorismate mutase/prephenate dehydrogenase, at 2,975,509 to 2,976,630
_RS14700
ECOLIN_RS14705: ECOLIN_RS14705 - 3-deoxy-7-phosphoheptulonate synthase AroF, at 2,976,641 to 2,977,711
_RS14705
ECOLIN_RS14710: ECOLIN_RS14710 - DUF2799 domain-containing protein, at 2,977,921 to 2,978,286
_RS14710
Group
Condition
ECOLIN
_RS31555
ECOLIN
_RS14695
ECOLIN
_RS14700
ECOLIN
_RS14705
ECOLIN
_RS14710
carbon source
Sodium-DL-Lactate
-0.0
-5.8
-3.8
-1.5
-0.1
carbon source
Sodium-DL-Lactate
+0.0
-3.1
-3.0
-0.9
-0.1
carbon source
D-Glucose
+0.4
-5.1
-2.5
+0.2
+0.7
carbon source
L-Rhamnose
-0.3
-1.3
-0.1
-0.8
-3.3
carbon source
D-Glucose
+1.9
-4.5
-2.1
-0.2
-0.4
carbon source
L-Rhamnose
-0.2
-2.3
-0.7
-0.3
-0.8
phage
Phi92
+0.3
+0.4
-0.2
-0.1
-3.9
phage
Bas52
-0.1
-0.1
-0.0
+0.2
-3.4
phage
Bas45
+0.2
-2.5
-0.3
+0.1
-0.2
no phage control
Control_Nissle
-0.0
-1.1
+0.1
+0.1
-0.8
carbon source
L-Arabinose
+0.7
-4.2
+0.1
-0.1
+2.0
phage
Bas21
+0.1
-2.2
+0.1
+0.1
+0.5
phage
Bas04
+0.3
-0.6
+0.3
-0.3
-1.1
phage
Bas48
-0.2
-0.4
+0.2
-0.0
-0.9
phage
K25
-0.2
-0.9
+0.2
+0.4
-0.7
phage
Bas52
+0.4
-0.0
+0.1
+0.0
-1.6
phage
JK16
+0.6
-1.1
+0.0
+0.1
-0.5
phage
Bas38
-0.0
-0.9
+0.2
+0.3
-0.5
phage
Bas44
+0.1
-0.5
+0.1
+0.2
-0.8
phage
Bas22
-0.3
-1.0
-0.3
+0.1
+0.6
phage
Bas51
-0.7
-1.0
+0.0
+0.4
+0.5
phage
Bas63
-0.4
-0.8
+0.1
+0.3
+0.3
phage
Bas68
-0.2
-0.8
+0.0
+0.0
+0.7
phage
P1vir
+0.4
-0.6
-0.1
-0.4
+0.8
phage
Bas44
+0.5
-0.9
-0.2
+0.2
+0.6
phage
RB51
-0.3
-0.7
-0.1
+0.4
+1.0
carbon source
L-Arabinose
+0.9
-2.1
-0.4
-0.0
+2.6
phage
K25
+0.2
-0.2
-0.0
+0.4
+1.0
carbon source
Casamino-acids
-0.0
+1.1
+0.5
+0.1
-0.2
phage
Bas10
+0.5
+0.1
+0.2
+0.2
+0.6
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