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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS14670 and ECOLIN_RS14675 overlap by 4 nucleotides
ECOLIN_RS14675 and ECOLIN_RS14680 are separated by 134 nucleotides
ECOLIN_RS14680 and ECOLIN_RS14690 are separated by 269 nucleotides
ECOLIN_RS14690 and ECOLIN_RS31555 are separated by 103 nucleotides
ECOLIN_RS14670: ECOLIN_RS14670 - purine nucleoside phosphorylase YfiH, at 2,970,865 to 2,971,596
_RS14670
ECOLIN_RS14675: ECOLIN_RS14675 - 23S rRNA pseudouridine(1911/1915/1917) synthase RluD, at 2,971,593 to 2,972,573
_RS14675
ECOLIN_RS14680: ECOLIN_RS14680 - outer membrane protein assembly factor BamD, at 2,972,708 to 2,973,445
_RS14680
ECOLIN_RS14690: ECOLIN_RS14690 - ribosome-associated translation inhibitor RaiA, at 2,973,715 to 2,974,056
_RS14690
ECOLIN_RS31555: ECOLIN_RS31555 - pheA operon leader peptide PheL, at 2,974,160 to 2,974,207
_RS31555
Group
Condition
ECOLIN
_RS14670
ECOLIN
_RS14675
ECOLIN
_RS14680
ECOLIN
_RS14690
ECOLIN
_RS31555
phage
Bas45
-5.9
-2.1
N.D.
N.D.
+0.2
phage
TP7
-1.1
-2.7
N.D.
N.D.
+0.1
phage
Bas22
-1.1
-1.8
N.D.
N.D.
-0.3
phage
Bas21
-0.9
-1.8
N.D.
N.D.
+0.1
phage
EV219
-0.1
-2.5
N.D.
N.D.
+0.0
phage
Bas38
+0.1
-2.5
N.D.
N.D.
-0.0
phage
JK38
-0.7
-2.0
N.D.
N.D.
+0.3
phage
JK38
-0.8
-1.7
N.D.
N.D.
+0.2
phage
Bas21
-0.8
-1.5
N.D.
N.D.
+0.1
phage
EV219
-0.4
-1.9
N.D.
N.D.
+0.1
phage
Bas37
-0.5
-1.9
N.D.
N.D.
+0.3
phage
TP7
-1.0
-1.6
N.D.
N.D.
+0.5
phage
Bas31
-0.3
-1.9
N.D.
N.D.
+0.2
phage
Bas37
-0.8
-1.5
N.D.
N.D.
+0.3
phage
Bas27
-0.4
-1.6
N.D.
N.D.
+0.0
phage
Bas22
-0.7
-1.4
N.D.
N.D.
+0.3
phage
Bas31
-0.4
-1.8
N.D.
N.D.
+0.4
phage
Bas51
-0.5
-0.7
N.D.
N.D.
-0.7
phage
Bas38
+0.4
-2.1
N.D.
N.D.
+0.0
phage
Bas48
-0.6
-1.0
N.D.
N.D.
+0.0
phage
CEV1
+0.0
-2.1
N.D.
N.D.
+0.6
phage
Bas48
+0.1
-1.3
N.D.
N.D.
-0.2
phage
Bas27
+0.1
-1.5
N.D.
N.D.
+0.2
phage
Bas52
-0.8
-0.7
N.D.
N.D.
+0.4
carbon source
L-Rhamnose
+0.5
-0.8
N.D.
N.D.
-0.2
phage
Bas44
-0.1
-0.9
N.D.
N.D.
+0.5
phage
CEV1
+0.7
-1.5
N.D.
N.D.
+0.5
phage
JK16
+0.2
-0.7
N.D.
N.D.
+0.6
carbon source
L-Arabinose
+0.9
-0.1
N.D.
N.D.
+0.9
carbon source
D-Glucose
+0.5
+1.0
N.D.
N.D.
+1.9
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