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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS14455 and ECOLIN_RS14460 overlap by 11 nucleotides
ECOLIN_RS14460 and ECOLIN_RS14465 are separated by 164 nucleotides
ECOLIN_RS14465 and ECOLIN_RS14470 are separated by 575 nucleotides
ECOLIN_RS14470 and ECOLIN_RS14475 are separated by 257 nucleotides
ECOLIN_RS14455: ECOLIN_RS14455 - two-component system response regulator GlrR, at 2,922,383 to 2,923,717
_RS14455
ECOLIN_RS14460: ECOLIN_RS14460 - two-component system QseEF-associated lipoprotein QseG, at 2,923,707 to 2,924,420
_RS14460
ECOLIN_RS14465: ECOLIN_RS14465 - two component system sensor histidine kinase QseE/GlrK, at 2,924,585 to 2,926,012
_RS14465
ECOLIN_RS14470: ECOLIN_RS14470 - phosphoribosylformylglycinamidine synthase, at 2,926,588 to 2,930,475
_RS14470
ECOLIN_RS14475: ECOLIN_RS14475 - membrane-bound lytic murein transglycosylase MltF, at 2,930,733 to 2,932,289
_RS14475
Group
Condition
ECOLIN
_RS14455
ECOLIN
_RS14460
ECOLIN
_RS14465
ECOLIN
_RS14470
ECOLIN
_RS14475
phage
TP7
-4.2
-3.8
-3.5
+0.2
+1.3
phage
EV219
-3.7
-2.8
-2.9
+0.7
+1.0
phage
JK38
-2.6
-2.5
-3.0
+0.1
+0.9
carbon source
Casamino-acids
+0.2
-0.3
+0.0
-6.9
+0.2
phage
Bas45
-2.8
-2.9
-2.2
+0.2
+1.1
phage
Bas37
-3.2
-2.4
-2.0
+0.1
+1.0
phage
TP7
-2.7
-2.6
-2.8
+0.3
+1.2
carbon source
Casamino-acids
+0.2
+0.0
-0.1
-6.2
+0.1
phage
Bas31
-2.2
-2.3
-1.9
+0.1
+0.5
phage
EV219
-2.7
-2.5
-1.5
+0.3
+0.7
phage
JK38
-2.3
-2.5
-1.8
+0.3
+0.9
phage
Bas37
-2.2
-2.4
-2.1
+0.2
+1.1
phage
Bas38
-1.9
-1.8
-1.5
-0.2
+0.9
phage
Bas21
-1.9
-2.3
-1.6
+0.2
+1.1
phage
Bas31
-2.1
-1.9
-1.3
+0.3
+0.5
phage
Bas22
-1.7
-1.4
-2.1
+0.1
+0.9
phage
Bas21
-2.4
-1.3
-1.6
+0.2
+1.1
phage
Bas38
-1.5
-1.7
-1.5
+0.0
+1.0
phage
CEV1
-1.9
-1.2
-1.1
+0.2
+0.5
phage
Bas27
-1.5
-1.2
-1.1
+0.3
+0.1
phage
Bas27
-1.9
-1.2
-0.7
+0.3
+0.2
carbon source
Sodium-DL-Lactate
+0.1
+0.1
+0.1
-3.6
+0.1
carbon source
Sodium-DL-Lactate
+0.4
-0.3
-0.1
-3.0
+0.1
phage
Bas22
-1.4
-1.0
-0.6
+0.1
+0.5
carbon source
L-Arabinose
+0.1
-0.5
+0.1
-1.8
-0.2
phage
Bas05
-1.0
-0.9
-0.6
+0.1
+0.3
phage
JK16
-0.8
-0.5
-0.5
-0.2
+0.0
phage
P1vir
-1.5
-0.7
-0.3
+0.0
+0.5
phage
Bas10
-1.0
-0.3
-0.7
+0.1
+0.0
carbon source
L-Rhamnose
+0.6
+0.4
-0.3
-0.8
+0.0
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