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Protein
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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS14295 and ECOLIN_RS14300 are separated by 284 nucleotides
ECOLIN_RS14300 and ECOLIN_RS14305 are separated by 149 nucleotides
ECOLIN_RS14305 and ECOLIN_RS14310 are separated by 148 nucleotides
ECOLIN_RS14310 and ECOLIN_RS14315 are separated by 0 nucleotides
ECOLIN_RS14295: ECOLIN_RS14295 - cytoskeleton protein RodZ, at 2,882,522 to 2,883,529
_RS14295
ECOLIN_RS14300: ECOLIN_RS14300 - bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN, at 2,883,814 to 2,884,968
_RS14300
ECOLIN_RS14305: ECOLIN_RS14305 - nucleoside-diphosphate kinase, at 2,885,118 to 2,885,549
_RS14305
ECOLIN_RS14310: ECOLIN_RS14310 - peptidoglycan glycosyltransferase PbpC, at 2,885,698 to 2,888,010
_RS14310
ECOLIN_RS14315: ECOLIN_RS14315 - alpha2-macroglobulin, at 2,888,011 to 2,892,972
_RS14315
Group
Condition
ECOLIN
_RS14295
ECOLIN
_RS14300
ECOLIN
_RS14305
ECOLIN
_RS14310
ECOLIN
_RS14315
phage
JK38
-1.6
-0.1
-3.2
+0.1
+0.1
phage
Bas37
-1.7
-0.5
-2.3
+0.1
+0.3
phage
TP7
-1.7
-0.5
-2.0
+0.4
+0.3
phage
JK38
-1.4
-0.1
-1.7
-0.1
+0.1
phage
Bas38
-0.4
-0.5
-2.4
+0.1
+0.0
phage
Bas38
-0.6
-0.5
-2.2
+0.3
-0.1
phage
Bas45
-2.2
+0.3
-1.1
-0.0
+0.2
phage
Bas37
-1.3
-0.5
-1.5
+0.4
+0.1
phage
Bas10
-0.8
-0.2
-1.6
-0.1
-0.0
phage
Bas31
-1.0
-0.1
-1.3
+0.2
-0.4
phage
EV219
-1.1
-0.2
-1.3
+0.1
-0.1
phage
TP7
-1.8
+0.0
-1.3
+0.3
+0.2
phage
Bas27
-0.6
-0.2
-0.9
-0.4
-0.0
phage
P1vir
-1.2
+0.2
-0.9
-0.3
+0.1
phage
Bas22
-1.4
-0.2
-0.9
+0.2
+0.2
phage
Bas05
-0.7
-0.2
-0.7
-0.3
-0.2
phage
EV219
-1.5
-0.5
-0.3
+0.1
+0.2
phage
Bas48
-0.6
-0.1
-0.8
-0.4
+0.0
phage
Bas21
-0.7
-0.2
-0.7
-0.1
-0.1
phage
CEV1
-0.7
-0.1
-0.6
-0.2
-0.2
phage
Bas31
-0.8
-0.2
-1.1
+0.2
+0.1
phage
Bas22
-0.7
-0.3
-0.4
-0.2
+0.1
no phage control
Control_Nissle
-0.4
+0.3
-1.1
-0.2
-0.0
phage
Bas63
-0.5
+0.1
-0.9
-0.3
+0.2
phage
JK16
-0.7
-0.0
-0.7
+0.2
-0.1
phage
RB51
-0.6
+0.2
-0.6
-0.4
+0.2
phage
K25
-0.4
+0.2
-0.7
-0.3
+0.3
phage
Phi92
+0.4
+0.0
-1.4
-0.2
+0.3
carbon source
Sodium-DL-Lactate
-0.4
+0.1
-0.6
+0.5
+0.2
phage
RB51
-0.3
+0.2
-0.6
+0.3
+0.4
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