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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS14285 and ECOLIN_RS14290 are separated by 110 nucleotides
ECOLIN_RS14290 and ECOLIN_RS14295 are separated by 26 nucleotides
ECOLIN_RS14295 and ECOLIN_RS14300 are separated by 284 nucleotides
ECOLIN_RS14300 and ECOLIN_RS14305 are separated by 149 nucleotides
ECOLIN_RS14285: ECOLIN_RS14285 - histidine--tRNA ligase, at 2,879,992 to 2,881,266
_RS14285
ECOLIN_RS14290: ECOLIN_RS14290 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 2,881,377 to 2,882,495
_RS14290
ECOLIN_RS14295: ECOLIN_RS14295 - cytoskeleton protein RodZ, at 2,882,522 to 2,883,529
_RS14295
ECOLIN_RS14300: ECOLIN_RS14300 - bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN, at 2,883,814 to 2,884,968
_RS14300
ECOLIN_RS14305: ECOLIN_RS14305 - nucleoside-diphosphate kinase, at 2,885,118 to 2,885,549
_RS14305
Group
Condition
ECOLIN
_RS14285
ECOLIN
_RS14290
ECOLIN
_RS14295
ECOLIN
_RS14300
ECOLIN
_RS14305
phage
JK38
N.D.
N.D.
-1.6
-0.1
-3.2
phage
Bas37
N.D.
N.D.
-1.7
-0.5
-2.3
phage
TP7
N.D.
N.D.
-1.7
-0.5
-2.0
phage
Bas38
N.D.
N.D.
-0.4
-0.5
-2.4
phage
Bas37
N.D.
N.D.
-1.3
-0.5
-1.5
phage
Bas38
N.D.
N.D.
-0.6
-0.5
-2.2
phage
JK38
N.D.
N.D.
-1.4
-0.1
-1.7
phage
TP7
N.D.
N.D.
-1.8
+0.0
-1.3
phage
Bas45
N.D.
N.D.
-2.2
+0.3
-1.1
phage
Bas10
N.D.
N.D.
-0.8
-0.2
-1.6
phage
EV219
N.D.
N.D.
-1.1
-0.2
-1.3
phage
Bas22
N.D.
N.D.
-1.4
-0.2
-0.9
phage
Bas31
N.D.
N.D.
-1.0
-0.1
-1.3
phage
EV219
N.D.
N.D.
-1.5
-0.5
-0.3
phage
Bas31
N.D.
N.D.
-0.8
-0.2
-1.1
phage
P1vir
N.D.
N.D.
-1.2
+0.2
-0.9
phage
Bas27
N.D.
N.D.
-0.6
-0.2
-0.9
phage
Bas21
N.D.
N.D.
-0.7
-0.2
-0.7
phage
Bas05
N.D.
N.D.
-0.7
-0.2
-0.7
phage
Bas48
N.D.
N.D.
-0.6
-0.1
-0.8
phage
Bas05
N.D.
N.D.
-0.5
-0.1
-0.9
phage
Bas22
N.D.
N.D.
-0.7
-0.3
-0.4
phage
Bas21
N.D.
N.D.
-0.7
-0.5
-0.2
phage
JK16
N.D.
N.D.
-0.7
-0.0
-0.7
phage
CEV1
N.D.
N.D.
-0.7
-0.1
-0.6
phage
Bas63
N.D.
N.D.
-0.5
+0.1
-0.9
phage
Bas04
N.D.
N.D.
-0.5
+0.0
-0.9
no phage control
Control_Nissle
N.D.
N.D.
-0.4
+0.3
-1.1
phage
Phi92
N.D.
N.D.
+0.4
+0.0
-1.4
phage
RB51
N.D.
N.D.
-0.6
+0.2
-0.6
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