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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS14040 and ECOLIN_RS14045 overlap by 26 nucleotides
ECOLIN_RS14045 and ECOLIN_RS14050 are separated by 12 nucleotides
ECOLIN_RS14050 and ECOLIN_RS14055 are separated by 292 nucleotides
ECOLIN_RS14055 and ECOLIN_RS14060 are separated by 288 nucleotides
ECOLIN_RS14040: ECOLIN_RS14040 - ethanolamine utilization acetate kinase EutQ, at 2,817,125 to 2,817,826
_RS14040
ECOLIN_RS14045: ECOLIN_RS14045 - ethanolamine utilization acetate kinase EutP, at 2,817,801 to 2,818,280
_RS14045
ECOLIN_RS14050: ECOLIN_RS14050 - ethanolamine utilization microcompartment protein EutS, at 2,818,293 to 2,818,628
_RS14050
ECOLIN_RS14055: ECOLIN_RS14055 - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 2,818,921 to 2,821,200
_RS14055
ECOLIN_RS14060: ECOLIN_RS14060 - transaldolase, at 2,821,489 to 2,822,439
_RS14060
Group
Condition
ECOLIN
_RS14040
ECOLIN
_RS14045
ECOLIN
_RS14050
ECOLIN
_RS14055
ECOLIN
_RS14060
carbon source
Casamino-acids
N.D.
-0.4
N.D.
-0.7
-0.4
phage
RB51
N.D.
-1.3
N.D.
-0.5
+0.5
carbon source
L-Rhamnose
N.D.
+0.1
N.D.
-1.7
+0.7
phage
RB68
N.D.
+0.2
N.D.
-1.3
+0.3
phage
Bas63
N.D.
+0.1
N.D.
-0.2
-0.6
phage
Bas38
N.D.
-0.2
N.D.
+0.3
-0.7
phage
Bas21
N.D.
-0.4
N.D.
-0.3
+0.2
phage
EV219
N.D.
-0.9
N.D.
+0.1
+0.4
phage
K25
N.D.
+0.6
N.D.
-0.6
-0.3
phage
JK16
N.D.
+0.1
N.D.
+0.3
-0.5
phage
Bas05
N.D.
-0.7
N.D.
+0.4
+0.4
carbon source
Sodium-DL-Lactate
N.D.
+0.5
N.D.
-0.2
-0.3
phage
Bas10
N.D.
-0.6
N.D.
+0.2
+0.5
phage
Bas63
N.D.
-0.3
N.D.
+0.5
-0.1
phage
Bas51
N.D.
+0.6
N.D.
+0.4
-0.5
phage
Bas22
N.D.
-0.4
N.D.
+1.0
-0.1
carbon source
L-Rhamnose
N.D.
+0.9
N.D.
+0.1
-0.4
phage
K25
N.D.
-0.5
N.D.
+0.7
+0.5
phage
JK38
N.D.
-0.2
N.D.
+0.4
+0.5
phage
Bas52
N.D.
-0.3
N.D.
+0.9
+0.5
phage
RB51
N.D.
-0.1
N.D.
+0.5
+0.7
phage
Bas48
N.D.
-0.1
N.D.
+0.7
+0.5
phage
Bas52
N.D.
+0.2
N.D.
+0.5
+0.6
phage
Bas05
N.D.
+0.4
N.D.
+0.4
+0.6
phage
Phi92
N.D.
+0.3
N.D.
+1.0
+0.2
phage
Bas45
N.D.
+0.7
N.D.
+1.2
-0.4
phage
P1vir
N.D.
+0.1
N.D.
+1.2
+0.5
carbon source
D-Glucose
N.D.
+0.9
N.D.
+0.6
+0.3
no phage control
Control_Nissle
N.D.
+0.4
N.D.
+1.1
+0.2
phage
CEV1
N.D.
+0.7
N.D.
+0.9
+0.7
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