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Protein
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Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS13825 and ECOLIN_RS13830 are separated by 60 nucleotides
ECOLIN_RS13830 and ECOLIN_RS13835 are separated by 247 nucleotides
ECOLIN_RS13835 and ECOLIN_RS13840 are separated by 38 nucleotides
ECOLIN_RS13840 and ECOLIN_RS13845 are separated by 89 nucleotides
ECOLIN_RS13825: ECOLIN_RS13825 - xanthosine/proton symporter XapB, at 2,775,672 to 2,776,928
_RS13825
ECOLIN_RS13830: ECOLIN_RS13830 - xanthosine phosphorylase, at 2,776,989 to 2,777,822
_RS13830
ECOLIN_RS13835: ECOLIN_RS13835 - outer membrane protein OmpK, at 2,778,070 to 2,778,834
_RS13835
ECOLIN_RS13840: ECOLIN_RS13840 - LysR family transcriptional regulator, at 2,778,873 to 2,779,799
_RS13840
ECOLIN_RS13845: ECOLIN_RS13845 - bile acid:sodium symporter family protein, at 2,779,889 to 2,780,887
_RS13845
Group
Condition
ECOLIN
_RS13825
ECOLIN
_RS13830
ECOLIN
_RS13835
ECOLIN
_RS13840
ECOLIN
_RS13845
carbon source
L-Rhamnose
-0.3
N.D.
-3.3
N.D.
+0.1
carbon source
L-Rhamnose
+0.1
N.D.
-1.7
N.D.
-0.8
phage
Bas52
+0.5
N.D.
-2.3
N.D.
-0.5
phage
CEV1
-0.4
N.D.
-0.2
N.D.
-1.0
phage
Bas48
-0.0
N.D.
-2.3
N.D.
+0.9
phage
K20
+0.1
N.D.
-2.2
N.D.
+1.5
phage
CEV1
-0.1
N.D.
-1.1
N.D.
+0.7
phage
Bas27
-0.1
N.D.
-1.0
N.D.
+0.7
phage
Bas21
-0.2
N.D.
-0.9
N.D.
+0.8
phage
Bas45
-0.3
N.D.
+1.1
N.D.
-0.9
phage
Phi92
+0.3
N.D.
-1.0
N.D.
+0.5
phage
Bas37
+0.0
N.D.
-0.8
N.D.
+0.8
phage
RB51
+0.5
N.D.
-0.5
N.D.
+0.5
phage
Bas10
+0.0
N.D.
-0.8
N.D.
+1.3
phage
Phi92
+0.4
N.D.
-0.7
N.D.
+1.0
phage
RB68
+0.2
N.D.
+1.1
N.D.
-0.3
phage
Bas68
+0.3
N.D.
-1.7
N.D.
+2.3
phage
Bas37
+0.3
N.D.
-0.5
N.D.
+1.2
phage
JK16
-0.3
N.D.
+0.2
N.D.
+1.0
phage
TP7
-0.1
N.D.
-0.2
N.D.
+1.4
phage
Bas22
+0.1
N.D.
-0.2
N.D.
+1.5
phage
Bas68
+0.2
N.D.
+0.1
N.D.
+1.1
no phage control
Control_Nissle
+0.2
N.D.
+0.3
N.D.
+1.0
phage
Bas05
+0.3
N.D.
+0.0
N.D.
+1.3
phage
Bas05
+0.2
N.D.
-0.3
N.D.
+1.8
phage
RB51
-0.2
N.D.
+0.4
N.D.
+1.6
phage
Bas63
+0.4
N.D.
+0.2
N.D.
+1.3
phage
Bas44
+0.3
N.D.
+0.3
N.D.
+1.4
phage
Bas63
+0.4
N.D.
+0.3
N.D.
+1.3
phage
Bas51
+0.1
N.D.
+0.7
N.D.
+1.7
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