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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS13485 and ECOLIN_RS13490 are separated by 3 nucleotides
ECOLIN_RS13490 and ECOLIN_RS13495 are separated by 34 nucleotides
ECOLIN_RS13495 and ECOLIN_RS13500 are separated by 165 nucleotides
ECOLIN_RS13500 and ECOLIN_RS13510 are separated by 319 nucleotides
ECOLIN_RS13485: ECOLIN_RS13485 - penicillin-insensitive murein endopeptidase, at 2,699,421 to 2,700,245
_RS13485
ECOLIN_RS13490: ECOLIN_RS13490 - chorismate synthase, at 2,700,249 to 2,701,334
_RS13490
ECOLIN_RS13495: ECOLIN_RS13495 - 50S ribosomal protein L3 N(5)-glutamine methyltransferase, at 2,701,369 to 2,702,301
_RS13495
ECOLIN_RS13500: ECOLIN_RS13500 - endonuclease SmrB, at 2,702,467 to 2,703,018
_RS13500
ECOLIN_RS13510: ECOLIN_RS13510 - StfH/YfcO family fimbrial adhesin, at 2,703,338 to 2,704,195
_RS13510
Group
Condition
ECOLIN
_RS13485
ECOLIN
_RS13490
ECOLIN
_RS13495
ECOLIN
_RS13500
ECOLIN
_RS13510
carbon source
L-Rhamnose
-2.6
N.D.
+0.5
-0.6
-0.6
phage
Bas52
-2.7
N.D.
+0.1
+0.7
-1.1
phage
Bas22
-1.6
N.D.
-0.5
-0.5
+0.1
carbon source
D-Glucose
-1.4
N.D.
-0.1
-0.7
+0.5
phage
EV219
-1.0
N.D.
+0.2
-0.7
-0.2
phage
Bas22
+0.8
N.D.
+0.1
-2.7
+0.2
phage
Bas44
+0.3
N.D.
-0.2
-1.7
+0.0
phage
Bas10
-0.9
N.D.
-0.4
+0.7
-0.9
no phage control
Control_Nissle
-1.6
N.D.
-0.5
+0.8
-0.1
phage
Bas38
-1.2
N.D.
-0.7
+0.8
-0.3
phage
Bas38
-1.3
N.D.
-0.4
+0.7
-0.3
phage
Bas45
-1.4
N.D.
-1.0
+0.8
+0.4
carbon source
L-Arabinose
-1.0
N.D.
+0.5
-0.8
+0.3
phage
Bas48
-0.7
N.D.
-0.7
+0.3
+0.2
phage
RB68
+0.3
N.D.
-0.4
+0.3
-1.0
phage
TP7
-1.2
N.D.
-0.8
+1.7
-0.4
phage
Bas21
-1.0
N.D.
-0.0
+0.7
-0.2
phage
K25
-0.9
N.D.
-0.3
+0.7
+0.0
phage
Bas27
-0.5
N.D.
-0.6
+1.0
-0.5
phage
Bas10
-1.4
N.D.
+0.0
+1.1
-0.1
phage
Bas05
-1.4
N.D.
-0.3
+1.5
+0.0
phage
Bas04
-0.6
N.D.
-0.2
+0.8
-0.2
phage
Bas31
-0.5
N.D.
+0.2
+0.6
-0.4
phage
TP7
-0.7
N.D.
-0.5
+1.3
-0.1
phage
Phi92
-0.9
N.D.
+0.0
+1.3
-0.4
phage
JK38
-0.8
N.D.
-0.2
+1.4
+0.0
phage
JK16
-0.8
N.D.
+0.2
+1.3
-0.2
phage
Bas21
-0.2
N.D.
+0.2
+1.6
-1.1
carbon source
Casamino-acids
+0.6
N.D.
-0.3
+0.7
+0.2
phage
Phi92
-0.3
N.D.
+0.2
+1.1
+0.2
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