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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS13345 and ECOLIN_RS13350 are separated by 57 nucleotides
ECOLIN_RS13350 and ECOLIN_RS13355 are separated by 55 nucleotides
ECOLIN_RS13355 and ECOLIN_RS13360 are separated by 135 nucleotides
ECOLIN_RS13360 and ECOLIN_RS13365 are separated by 56 nucleotides
ECOLIN_RS13345: ECOLIN_RS13345 - NUDIX hydrolase YfcD, at 2,673,198 to 2,673,740
_RS13345
ECOLIN_RS13350: ECOLIN_RS13350 - phosphodiesterase, at 2,673,798 to 2,674,349
_RS13350
ECOLIN_RS13355: ECOLIN_RS13355 - glutathione transferase, at 2,674,405 to 2,675,049
_RS13355
ECOLIN_RS13360: ECOLIN_RS13360 - GSH-dependent disulfide bond oxidoreductase, at 2,675,185 to 2,675,832
_RS13360
ECOLIN_RS13365: ECOLIN_RS13365 - dihydroneopterin triphosphate 2'-epimerase, at 2,675,889 to 2,676,251
_RS13365
Group
Condition
ECOLIN
_RS13345
ECOLIN
_RS13350
ECOLIN
_RS13355
ECOLIN
_RS13360
ECOLIN
_RS13365
no phage control
Control_Nissle
-0.9
-0.8
-0.1
N.D.
-0.4
phage
Bas51
-0.3
-0.3
-0.6
N.D.
-0.8
phage
P1vir
-1.0
-0.1
-0.0
N.D.
-0.7
phage
RB51
-0.5
-0.0
-0.4
N.D.
-0.7
phage
K20
-1.7
+0.0
+0.0
N.D.
-0.0
phage
Bas63
-0.5
-0.4
-0.5
N.D.
-0.3
phage
Bas48
-0.5
-0.4
-0.2
N.D.
-0.5
phage
RB68
-0.8
-0.3
-0.4
N.D.
+0.1
carbon source
Sodium-DL-Lactate
-0.6
+0.3
-0.7
N.D.
-0.4
phage
Bas52
-0.6
-0.0
-0.5
N.D.
-0.1
phage
K25
-0.4
+0.2
-0.2
N.D.
-0.9
carbon source
L-Rhamnose
-0.2
+0.4
-0.7
N.D.
-0.7
phage
Bas68
-0.9
+0.0
-0.0
N.D.
-0.2
phage
Bas44
-0.8
+0.2
+0.1
N.D.
-0.7
phage
Bas63
-1.2
-0.2
+0.3
N.D.
+0.3
phage
JK16
+0.2
-0.8
+0.3
N.D.
-0.6
phage
Bas45
+0.3
-0.2
-0.5
N.D.
-0.2
phage
Bas52
-0.2
-0.7
+0.5
N.D.
-0.3
phage
Bas44
-0.8
+0.3
-0.3
N.D.
+0.2
phage
Bas22
-1.1
+0.4
-0.3
N.D.
+0.4
phage
EV219
+0.9
-0.4
-0.1
N.D.
-0.8
phage
K25
-0.5
+0.2
+0.4
N.D.
-0.4
carbon source
L-Arabinose
-0.5
+0.4
-0.5
N.D.
+0.4
carbon source
D-Glucose
-0.0
+0.0
-0.5
N.D.
+0.6
phage
Bas27
-0.1
-0.4
+0.5
N.D.
+0.2
phage
Bas21
+0.3
-0.7
+0.6
N.D.
+0.0
phage
Bas37
+0.6
-0.7
-0.2
N.D.
+0.7
carbon source
L-Arabinose
-0.1
+0.4
+0.3
N.D.
+0.3
phage
JK16
+0.5
-0.2
+0.6
N.D.
+0.6
carbon source
L-Rhamnose
+0.3
-0.3
-0.1
N.D.
+1.7
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