Fitness for 5 genes in Escherichia coli Nissle 1917

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500 ntECOLIN_RS13345 and ECOLIN_RS13350 are separated by 57 nucleotidesECOLIN_RS13350 and ECOLIN_RS13355 are separated by 55 nucleotidesECOLIN_RS13355 and ECOLIN_RS13360 are separated by 135 nucleotidesECOLIN_RS13360 and ECOLIN_RS13365 are separated by 56 nucleotides ECOLIN_RS13345: ECOLIN_RS13345 - NUDIX hydrolase YfcD, at 2,673,198 to 2,673,740 _RS13345 ECOLIN_RS13350: ECOLIN_RS13350 - phosphodiesterase, at 2,673,798 to 2,674,349 _RS13350 ECOLIN_RS13355: ECOLIN_RS13355 - glutathione transferase, at 2,674,405 to 2,675,049 _RS13355 ECOLIN_RS13360: ECOLIN_RS13360 - GSH-dependent disulfide bond oxidoreductase, at 2,675,185 to 2,675,832 _RS13360 ECOLIN_RS13365: ECOLIN_RS13365 - dihydroneopterin triphosphate 2'-epimerase, at 2,675,889 to 2,676,251 _RS13365
Group Condition ECOLIN_RS13345 ECOLIN_RS13350 ECOLIN_RS13355 ECOLIN_RS13360 ECOLIN_RS13365
no phage control Control_Nissle -0.9 -0.8 -0.1 N.D. -0.4
phage Bas51 -0.3 -0.3 -0.6 N.D. -0.8
phage P1vir -1.0 -0.1 -0.0 N.D. -0.7
phage RB51 -0.5 -0.0 -0.4 N.D. -0.7
phage K20 -1.7 +0.0 +0.0 N.D. -0.0
phage Bas63 -0.5 -0.4 -0.5 N.D. -0.3
phage Bas48 -0.5 -0.4 -0.2 N.D. -0.5
phage RB68 -0.8 -0.3 -0.4 N.D. +0.1
carbon source Sodium-DL-Lactate -0.6 +0.3 -0.7 N.D. -0.4
phage Bas52 -0.6 -0.0 -0.5 N.D. -0.1
phage K25 -0.4 +0.2 -0.2 N.D. -0.9
carbon source L-Rhamnose -0.2 +0.4 -0.7 N.D. -0.7
phage Bas68 -0.9 +0.0 -0.0 N.D. -0.2
phage Bas44 -0.8 +0.2 +0.1 N.D. -0.7
phage Bas63 -1.2 -0.2 +0.3 N.D. +0.3
phage JK16 +0.2 -0.8 +0.3 N.D. -0.6
phage Bas45 +0.3 -0.2 -0.5 N.D. -0.2
phage Bas52 -0.2 -0.7 +0.5 N.D. -0.3
phage Bas44 -0.8 +0.3 -0.3 N.D. +0.2
phage Bas22 -1.1 +0.4 -0.3 N.D. +0.4
phage EV219 +0.9 -0.4 -0.1 N.D. -0.8
phage K25 -0.5 +0.2 +0.4 N.D. -0.4
carbon source L-Arabinose -0.5 +0.4 -0.5 N.D. +0.4
carbon source D-Glucose -0.0 +0.0 -0.5 N.D. +0.6
phage Bas27 -0.1 -0.4 +0.5 N.D. +0.2
phage Bas21 +0.3 -0.7 +0.6 N.D. +0.0
phage Bas37 +0.6 -0.7 -0.2 N.D. +0.7
carbon source L-Arabinose -0.1 +0.4 +0.3 N.D. +0.3
phage JK16 +0.5 -0.2 +0.6 N.D. +0.6
carbon source L-Rhamnose +0.3 -0.3 -0.1 N.D. +1.7
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