Fitness for 5 genes in Escherichia coli Nissle 1917

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500 ntECOLIN_RS12705 and ECOLIN_RS12710 are separated by 117 nucleotidesECOLIN_RS12710 and ECOLIN_RS12715 are separated by 38 nucleotidesECOLIN_RS12715 and ECOLIN_RS12720 are separated by 411 nucleotidesECOLIN_RS12720 and ECOLIN_RS12725 are separated by 180 nucleotides ECOLIN_RS12705: ECOLIN_RS12705 - mannitol dehydrogenase family protein, at 2,528,835 to 2,530,301 _RS12705 ECOLIN_RS12710: ECOLIN_RS12710 - zinc-binding GTPase YeiR, at 2,530,419 to 2,531,405 _RS12710 ECOLIN_RS12715: ECOLIN_RS12715 - Kdo(2)-lipid A phosphotransferase, at 2,531,444 to 2,532,157 _RS12715 ECOLIN_RS12720: ECOLIN_RS12720 - bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase, at 2,532,569 to 2,533,135 _RS12720 ECOLIN_RS12725: ECOLIN_RS12725 - cyclic di-GMP phosphodiesterase, at 2,533,316 to 2,534,872 _RS12725
Group Condition ECOLIN_RS12705 ECOLIN_RS12710 ECOLIN_RS12715 ECOLIN_RS12720 ECOLIN_RS12725
phage TP7 -0.1 N.D. N.D. -0.9 -0.3
phage Bas45 +0.2 N.D. N.D. -1.7 +0.3
phage JK38 -0.2 N.D. N.D. -0.7 -0.1
phage Bas37 -0.1 N.D. N.D. -1.1 +0.2
phage Bas37 -0.2 N.D. N.D. -0.6 +0.1
phage K20 +0.1 N.D. N.D. +0.0 -0.8
phage Bas31 -0.1 N.D. N.D. -0.7 +0.1
phage JK38 +0.0 N.D. N.D. -0.8 +0.3
phage Bas21 -0.0 N.D. N.D. -0.8 +0.5
phage Bas21 -0.0 N.D. N.D. -0.6 +0.4
phage P1vir +0.4 N.D. N.D. -0.9 +0.2
phage TP7 +0.3 N.D. N.D. -0.8 +0.4
carbon source L-Rhamnose +0.0 N.D. N.D. -1.1 +1.3
phage Bas38 +0.3 N.D. N.D. -0.4 +0.3
phage Bas27 -0.2 N.D. N.D. -0.2 +0.5
carbon source L-Rhamnose +0.3 N.D. N.D. -0.3 +0.5
phage Phi92 -0.1 N.D. N.D. +0.0 +0.8
phage Bas38 +0.2 N.D. N.D. -0.0 +0.6
phage Bas44 +0.2 N.D. N.D. +0.2 +0.4
phage K25 +0.2 N.D. N.D. +0.4 +0.4
no phage control Control_Nissle +0.2 N.D. N.D. +0.0 +0.8
phage Bas63 +0.2 N.D. N.D. +0.3 +0.6
phage Bas63 +0.3 N.D. N.D. +0.3 +0.5
phage Bas51 +0.3 N.D. N.D. +0.0 +0.7
phage Bas48 +0.1 N.D. N.D. +0.5 +0.5
phage Bas48 +0.1 N.D. N.D. +0.2 +0.8
phage Bas52 +0.3 N.D. N.D. +0.2 +0.7
phage RB51 +0.7 N.D. N.D. +0.4 +0.3
phage RB68 +0.2 N.D. N.D. +0.4 +0.9
phage Bas44 +0.3 N.D. N.D. +0.2 +1.1
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