Fitness for 5 genes in Escherichia coli Nissle 1917

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500 ntECOLIN_RS10665 and ECOLIN_RS10670 are separated by 21 nucleotidesECOLIN_RS10670 and ECOLIN_RS10675 are separated by 40 nucleotidesECOLIN_RS10675 and ECOLIN_RS10680 are separated by 58 nucleotidesECOLIN_RS10680 and ECOLIN_RS10685 overlap by 22 nucleotides ECOLIN_RS10665: ECOLIN_RS10665 - DUF4222 domain-containing protein, at 2,076,683 to 2,076,937 _RS10665 ECOLIN_RS10670: ECOLIN_RS10670 - 3'-5' exonuclease, at 2,076,959 to 2,077,528 _RS10670 ECOLIN_RS10675: ECOLIN_RS10675 - excisionase family protein, at 2,077,569 to 2,077,805 _RS10675 ECOLIN_RS10680: ECOLIN_RS10680 - site-specific integrase, at 2,077,864 to 2,079,177 _RS10680 ECOLIN_RS10685: ECOLIN_RS10685 - DUF72 domain-containing protein, at 2,079,156 to 2,079,929 _RS10685
Group Condition ECOLIN_RS10665 ECOLIN_RS10670 ECOLIN_RS10675 ECOLIN_RS10680 ECOLIN_RS10685
carbon source L-Rhamnose N.D. +0.3 +0.5 N.D. -3.4
phage Bas44 N.D. -1.2 -0.3 N.D. -0.9
phage Bas38 N.D. -0.3 -1.2 N.D. -0.7
phage RB51 N.D. -0.8 -0.1 N.D. -1.2
phage RB51 N.D. +0.3 -1.2 N.D. -1.1
no phage control Control_Nissle N.D. +0.1 -0.4 N.D. -1.5
phage Bas51 N.D. -1.0 +0.2 N.D. -1.0
carbon source D-Glucose N.D. +0.7 -2.0 N.D. -0.2
phage EV219 N.D. -0.1 -1.4 N.D. +0.0
phage Bas44 N.D. +0.1 +0.4 N.D. -1.7
phage Bas22 N.D. -0.2 +0.7 N.D. -1.8
phage K20 N.D. -0.4 -0.9 N.D. +0.1
phage RB68 N.D. -0.1 -1.3 N.D. +0.3
phage Bas37 N.D. +0.0 +0.2 N.D. -1.3
phage Bas04 N.D. +0.0 -1.3 N.D. +0.4
phage K25 N.D. +0.1 +0.0 N.D. -1.1
phage Bas45 N.D. +0.2 -1.2 N.D. +0.1
carbon source D-Glucose N.D. -0.3 -0.8 N.D. +0.2
phage Bas52 N.D. -0.1 -1.6 N.D. +0.9
phage P1vir N.D. +0.4 -1.5 N.D. +0.4
phage Bas38 N.D. +0.3 -1.1 N.D. +0.3
phage Bas48 N.D. +0.2 +0.4 N.D. -0.9
phage Bas21 N.D. +0.8 -1.2 N.D. +0.1
phage Bas21 N.D. -0.3 -0.5 N.D. +0.6
phage Bas68 N.D. +0.4 +0.3 N.D. -0.7
phage JK16 N.D. +0.2 -0.8 N.D. +0.6
phage EV219 N.D. -0.3 -0.5 N.D. +1.0
carbon source L-Rhamnose N.D. +0.8 +0.4 N.D. -0.8
carbon source Casamino-acids N.D. +0.2 +0.2 N.D. +1.0
carbon source Sodium-DL-Lactate N.D. +0.2 +0.8 N.D. +0.6
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