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Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS10365 and ECOLIN_RS30690 are separated by 138 nucleotides
ECOLIN_RS30690 and ECOLIN_RS10370 are separated by 71 nucleotides
ECOLIN_RS10370 and ECOLIN_RS10375 are separated by 1 nucleotides
ECOLIN_RS10375 and ECOLIN_RS10380 are separated by 34 nucleotides
ECOLIN_RS10365: ECOLIN_RS10365 - Holliday junction branch migration protein RuvA, at 2,029,356 to 2,029,967
_RS10365
ECOLIN_RS30690: ECOLIN_RS30690 - stress response small protein YobI, at 2,030,106 to 2,030,171
_RS30690
ECOLIN_RS10370: ECOLIN_RS10370 - YebB family permuted papain-like enzyme, at 2,030,243 to 2,030,845
_RS10370
ECOLIN_RS10375: ECOLIN_RS10375 - crossover junction endodeoxyribonuclease RuvC, at 2,030,847 to 2,031,368
_RS10375
ECOLIN_RS10380: ECOLIN_RS10380 - YebC/PmpR family DNA-binding transcriptional regulator, at 2,031,403 to 2,032,143
_RS10380
Group
Condition
ECOLIN
_RS10365
ECOLIN
_RS30690
ECOLIN
_RS10370
ECOLIN
_RS10375
ECOLIN
_RS10380
phage
EV219
N.D.
N.D.
N.D.
N.D.
-1.4
phage
Bas45
N.D.
N.D.
N.D.
N.D.
-1.1
carbon source
Sodium-DL-Lactate
N.D.
N.D.
N.D.
N.D.
-1.0
carbon source
Sodium-DL-Lactate
N.D.
N.D.
N.D.
N.D.
-1.0
phage
Bas44
N.D.
N.D.
N.D.
N.D.
-0.8
phage
Bas52
N.D.
N.D.
N.D.
N.D.
-0.8
carbon source
L-Rhamnose
N.D.
N.D.
N.D.
N.D.
-0.8
phage
Bas63
N.D.
N.D.
N.D.
N.D.
-0.8
carbon source
D-Glucose
N.D.
N.D.
N.D.
N.D.
-0.8
carbon source
Casamino-acids
N.D.
N.D.
N.D.
N.D.
-0.8
phage
TP7
N.D.
N.D.
N.D.
N.D.
-0.7
phage
Bas27
N.D.
N.D.
N.D.
N.D.
-0.6
carbon source
L-Arabinose
N.D.
N.D.
N.D.
N.D.
-0.6
phage
JK38
N.D.
N.D.
N.D.
N.D.
-0.6
phage
RB51
N.D.
N.D.
N.D.
N.D.
-0.6
phage
Bas10
N.D.
N.D.
N.D.
N.D.
-0.5
phage
Bas21
N.D.
N.D.
N.D.
N.D.
-0.5
phage
K20
N.D.
N.D.
N.D.
N.D.
-0.5
phage
Bas68
N.D.
N.D.
N.D.
N.D.
-0.4
phage
Bas51
N.D.
N.D.
N.D.
N.D.
-0.4
phage
Bas04
N.D.
N.D.
N.D.
N.D.
-0.4
phage
RB51
N.D.
N.D.
N.D.
N.D.
-0.4
phage
Bas52
N.D.
N.D.
N.D.
N.D.
+0.4
phage
TP7
N.D.
N.D.
N.D.
N.D.
+0.5
phage
JK38
N.D.
N.D.
N.D.
N.D.
+0.5
phage
Bas31
N.D.
N.D.
N.D.
N.D.
+0.6
phage
Bas04
N.D.
N.D.
N.D.
N.D.
+0.6
carbon source
L-Rhamnose
N.D.
N.D.
N.D.
N.D.
+0.8
phage
Phi92
N.D.
N.D.
N.D.
N.D.
+0.8
phage
Phi92
N.D.
N.D.
N.D.
N.D.
+1.0
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