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Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS10185 and ECOLIN_RS10190 are separated by 191 nucleotides
ECOLIN_RS10190 and ECOLIN_RS10195 are separated by 19 nucleotides
ECOLIN_RS10195 and ECOLIN_RS10200 are separated by 96 nucleotides
ECOLIN_RS10200 and ECOLIN_RS10205 are separated by 130 nucleotides
ECOLIN_RS10185: ECOLIN_RS10185 - protease HtpX, at 1,995,680 to 1,996,561
_RS10185
ECOLIN_RS10190: ECOLIN_RS10190 - carboxy terminal-processing peptidase, at 1,996,753 to 1,998,801
_RS10190
ECOLIN_RS10195: ECOLIN_RS10195 - RNA chaperone ProQ, at 1,998,821 to 1,999,519
_RS10195
ECOLIN_RS10200: ECOLIN_RS10200 - L-methionine (R)-S-oxide reductase, at 1,999,616 to 2,000,117
_RS10200
ECOLIN_RS10205: ECOLIN_RS10205 - membrane integrity lipid transport subunit YebS, at 2,000,248 to 2,001,531
_RS10205
Group
Condition
ECOLIN
_RS10185
ECOLIN
_RS10190
ECOLIN
_RS10195
ECOLIN
_RS10200
ECOLIN
_RS10205
phage
P1vir
N.D.
N.D.
-4.8
N.D.
N.D.
phage
Bas31
N.D.
N.D.
-2.5
N.D.
N.D.
phage
EV219
N.D.
N.D.
-2.5
N.D.
N.D.
phage
Bas31
N.D.
N.D.
-2.5
N.D.
N.D.
phage
EV219
N.D.
N.D.
-2.1
N.D.
N.D.
phage
TP7
N.D.
N.D.
-1.9
N.D.
N.D.
phage
Bas37
N.D.
N.D.
-1.8
N.D.
N.D.
phage
TP7
N.D.
N.D.
-1.7
N.D.
N.D.
phage
Bas27
N.D.
N.D.
-1.4
N.D.
N.D.
phage
K25
N.D.
N.D.
-1.4
N.D.
N.D.
phage
Bas48
N.D.
N.D.
-1.3
N.D.
N.D.
phage
Bas10
N.D.
N.D.
-1.3
N.D.
N.D.
phage
Bas27
N.D.
N.D.
-1.2
N.D.
N.D.
phage
Bas21
N.D.
N.D.
-1.1
N.D.
N.D.
phage
Bas44
N.D.
N.D.
-1.1
N.D.
N.D.
phage
JK38
N.D.
N.D.
-1.1
N.D.
N.D.
phage
Bas10
N.D.
N.D.
-1.0
N.D.
N.D.
phage
JK38
N.D.
N.D.
-1.0
N.D.
N.D.
carbon source
L-Rhamnose
N.D.
N.D.
-0.9
N.D.
N.D.
phage
Bas38
N.D.
N.D.
-0.9
N.D.
N.D.
phage
CEV1
N.D.
N.D.
-0.9
N.D.
N.D.
phage
Bas63
N.D.
N.D.
-0.9
N.D.
N.D.
phage
Bas05
N.D.
N.D.
-0.9
N.D.
N.D.
phage
Bas38
N.D.
N.D.
-0.9
N.D.
N.D.
phage
K25
N.D.
N.D.
-0.8
N.D.
N.D.
phage
Bas37
N.D.
N.D.
-0.8
N.D.
N.D.
phage
K20
N.D.
N.D.
-0.8
N.D.
N.D.
phage
Bas04
N.D.
N.D.
-0.7
N.D.
N.D.
carbon source
D-Glucose
N.D.
N.D.
+0.8
N.D.
N.D.
carbon source
L-Arabinose
N.D.
N.D.
+0.8
N.D.
N.D.
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