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Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS09645 and ECOLIN_RS09650 are separated by 132 nucleotides
ECOLIN_RS09650 and ECOLIN_RS09655 are separated by 46 nucleotides
ECOLIN_RS09655 and ECOLIN_RS09660 are separated by 182 nucleotides
ECOLIN_RS09660 and ECOLIN_RS09665 are separated by 46 nucleotides
ECOLIN_RS09645: ECOLIN_RS09645 - metal-dependent hydrolase, at 1,897,620 to 1,898,210
_RS09645
ECOLIN_RS09650: ECOLIN_RS09650 - cystine/sulfocysteine:cation symporter, at 1,898,343 to 1,899,734
_RS09650
ECOLIN_RS09655: ECOLIN_RS09655 - cell division activator CedA, at 1,899,781 to 1,900,044
_RS09655
ECOLIN_RS09660: ECOLIN_RS09660 - catalase HPII, at 1,900,227 to 1,902,488
_RS09660
ECOLIN_RS09665: ECOLIN_RS09665 - chitin disaccharide deacetylase, at 1,902,535 to 1,903,293
_RS09665
Group
Condition
ECOLIN
_RS09645
ECOLIN
_RS09650
ECOLIN
_RS09655
ECOLIN
_RS09660
ECOLIN
_RS09665
phage
RB51
N.D.
-0.4
-1.5
N.D.
-0.7
no phage control
Control_Nissle
N.D.
-0.4
-1.7
N.D.
-0.0
carbon source
L-Rhamnose
N.D.
+0.4
+1.8
N.D.
-4.2
phage
Bas48
N.D.
-0.5
-0.4
N.D.
-1.1
phage
Bas68
N.D.
-0.5
-1.0
N.D.
-0.5
phage
Bas52
N.D.
-0.3
-1.8
N.D.
+0.6
phage
Bas38
N.D.
-1.1
-0.8
N.D.
+0.4
phage
JK16
N.D.
-0.6
-0.7
N.D.
-0.0
phage
Bas51
N.D.
+0.0
-0.6
N.D.
-0.8
phage
K20
N.D.
-0.7
-0.6
N.D.
-0.0
phage
Bas10
N.D.
-0.2
-1.4
N.D.
+0.2
phage
Bas63
N.D.
-0.5
-1.2
N.D.
+0.6
phage
Bas31
N.D.
-0.9
-0.5
N.D.
+0.3
phage
CEV1
N.D.
-1.0
-0.4
N.D.
+0.4
phage
RB51
N.D.
-0.5
+0.2
N.D.
-0.7
phage
Phi92
N.D.
+0.1
-1.3
N.D.
+0.3
phage
Bas21
N.D.
-0.8
-0.1
N.D.
+0.4
phage
Bas38
N.D.
-0.9
+0.2
N.D.
+0.2
phage
Bas04
N.D.
-0.4
-0.6
N.D.
+0.8
phage
Bas04
N.D.
-0.4
-0.5
N.D.
+0.8
phage
Bas22
N.D.
-0.8
-0.1
N.D.
+0.9
phage
Bas22
N.D.
-0.7
-0.0
N.D.
+0.9
phage
Bas37
N.D.
-0.8
+0.2
N.D.
+0.8
phage
TP7
N.D.
-0.7
+0.6
N.D.
+0.5
phage
JK38
N.D.
-0.6
+0.5
N.D.
+0.5
phage
Bas31
N.D.
-0.5
+0.6
N.D.
+0.4
carbon source
L-Rhamnose
N.D.
-1.0
+1.3
N.D.
+0.4
carbon source
Sodium-DL-Lactate
N.D.
-0.3
+0.6
N.D.
+0.9
phage
Bas27
N.D.
-0.2
+0.9
N.D.
+0.6
phage
Bas05
N.D.
-0.0
+0.7
N.D.
+0.8
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