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Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS08915 and ECOLIN_RS08920 are separated by 411 nucleotides
ECOLIN_RS08920 and ECOLIN_RS08925 are separated by 92 nucleotides
ECOLIN_RS08925 and ECOLIN_RS08930 are separated by 99 nucleotides
ECOLIN_RS08930 and ECOLIN_RS08935 are separated by 38 nucleotides
ECOLIN_RS08915: ECOLIN_RS08915 - MFS transporter, at 1,758,463 to 1,759,716
_RS08915
ECOLIN_RS08920: ECOLIN_RS08920 - acid resistance repetitive basic protein Asr, at 1,760,128 to 1,760,436
_RS08920
ECOLIN_RS08925: ECOLIN_RS08925 - hypothetical protein, at 1,760,529 to 1,760,612
_RS08925
ECOLIN_RS08930: ECOLIN_RS08930 - serine protease, at 1,760,712 to 1,761,533
_RS08930
ECOLIN_RS08935: ECOLIN_RS08935 - multidrug/spermidine efflux SMR transporter subunit MdtI, at 1,761,572 to 1,761,901
_RS08935
Group
Condition
ECOLIN
_RS08915
ECOLIN
_RS08920
ECOLIN
_RS08925
ECOLIN
_RS08930
ECOLIN
_RS08935
phage
Bas05
-0.6
N.D.
N.D.
N.D.
N.D.
carbon source
Sodium-DL-Lactate
-0.5
N.D.
N.D.
N.D.
N.D.
phage
CEV1
-0.4
N.D.
N.D.
N.D.
N.D.
phage
JK38
+0.4
N.D.
N.D.
N.D.
N.D.
phage
Bas38
+0.4
N.D.
N.D.
N.D.
N.D.
phage
Bas04
+0.4
N.D.
N.D.
N.D.
N.D.
phage
Bas44
+0.4
N.D.
N.D.
N.D.
N.D.
phage
Bas22
+0.4
N.D.
N.D.
N.D.
N.D.
phage
Bas51
+0.4
N.D.
N.D.
N.D.
N.D.
phage
Bas63
+0.5
N.D.
N.D.
N.D.
N.D.
phage
Bas10
+0.5
N.D.
N.D.
N.D.
N.D.
phage
TP7
+0.5
N.D.
N.D.
N.D.
N.D.
phage
K20
+0.5
N.D.
N.D.
N.D.
N.D.
carbon source
L-Arabinose
+0.6
N.D.
N.D.
N.D.
N.D.
phage
Bas44
+0.6
N.D.
N.D.
N.D.
N.D.
carbon source
L-Arabinose
+0.6
N.D.
N.D.
N.D.
N.D.
no phage control
Control_Nissle
+0.7
N.D.
N.D.
N.D.
N.D.
phage
Bas68
+0.7
N.D.
N.D.
N.D.
N.D.
phage
Bas52
+0.7
N.D.
N.D.
N.D.
N.D.
phage
JK16
+0.7
N.D.
N.D.
N.D.
N.D.
carbon source
Sodium-DL-Lactate
+0.8
N.D.
N.D.
N.D.
N.D.
phage
K25
+0.8
N.D.
N.D.
N.D.
N.D.
phage
Bas37
+0.8
N.D.
N.D.
N.D.
N.D.
phage
Bas38
+0.8
N.D.
N.D.
N.D.
N.D.
no phage control
Control_Nissle
+0.8
N.D.
N.D.
N.D.
N.D.
carbon source
D-Glucose
+0.8
N.D.
N.D.
N.D.
N.D.
phage
Bas21
+1.0
N.D.
N.D.
N.D.
N.D.
phage
RB51
+1.1
N.D.
N.D.
N.D.
N.D.
phage
Bas48
+1.1
N.D.
N.D.
N.D.
N.D.
phage
JK38
+1.2
N.D.
N.D.
N.D.
N.D.
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