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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS08555 and ECOLIN_RS08560 are separated by 130 nucleotides
ECOLIN_RS08560 and ECOLIN_RS08565 are separated by 155 nucleotides
ECOLIN_RS08565 and ECOLIN_RS08575 are separated by 361 nucleotides
ECOLIN_RS08575 and ECOLIN_RS08580 are separated by 56 nucleotides
ECOLIN_RS08555: ECOLIN_RS08555 - glycoside hydrolase family 10 protein, at 1,681,233 to 1,682,552
_RS08555
ECOLIN_RS08560: ECOLIN_RS08560 - acid resistance gamma-aminobutyrate antiporter GadC, at 1,682,683 to 1,684,218
_RS08560
ECOLIN_RS08565: ECOLIN_RS08565 - glutamate decarboxylase, at 1,684,374 to 1,685,774
_RS08565
ECOLIN_RS08575: ECOLIN_RS08575 - M16 family metallopeptidase, at 1,686,136 to 1,688,919
_RS08575
ECOLIN_RS08580: ECOLIN_RS08580 - TonB-dependent receptor plug domain-containing protein, at 1,688,976 to 1,691,348
_RS08580
Group
Condition
ECOLIN
_RS08555
ECOLIN
_RS08560
ECOLIN
_RS08565
ECOLIN
_RS08575
ECOLIN
_RS08580
phage
Bas10
-0.7
+0.2
N.D.
-1.1
-0.5
phage
Bas45
-0.2
-0.2
N.D.
-1.3
+0.1
phage
Bas04
-0.2
-0.8
N.D.
+0.4
-0.8
carbon source
D-Glucose
+0.7
-1.1
N.D.
-0.7
-0.2
phage
RB51
+0.4
-0.7
N.D.
-0.3
-0.6
carbon source
L-Rhamnose
+1.1
+0.7
N.D.
-2.5
-0.4
phage
Bas21
-0.4
-0.6
N.D.
+0.5
-0.7
phage
Phi92
+0.0
+0.5
N.D.
-0.7
-0.9
phage
Bas37
+0.4
-0.7
N.D.
-0.7
+0.2
phage
JK16
-0.2
-0.4
N.D.
+0.6
-0.6
phage
Bas22
+0.5
-2.0
N.D.
+1.3
-0.4
phage
Bas63
+0.6
-1.3
N.D.
+0.1
-0.2
phage
Bas38
+0.3
+0.2
N.D.
+0.5
-1.5
phage
Bas48
+0.5
+0.3
N.D.
-1.4
+0.0
phage
CEV1
-0.5
-0.9
N.D.
+0.8
+0.1
phage
P1vir
+0.6
-0.6
N.D.
+0.1
-0.4
phage
Bas31
-0.2
+0.8
N.D.
-0.6
-0.2
no phage control
Control_Nissle
+0.4
-1.5
N.D.
+0.5
+0.7
carbon source
D-Glucose
+0.8
+0.6
N.D.
-0.3
-0.9
phage
Bas48
+1.1
+0.1
N.D.
-1.1
+0.1
phage
Bas52
+1.0
+0.2
N.D.
-0.8
-0.3
phage
K20
+1.0
-0.4
N.D.
-0.4
+0.4
phage
Bas51
+0.6
-0.7
N.D.
+0.4
+0.5
phage
Bas63
+0.3
-0.6
N.D.
+0.9
+0.2
phage
K20
+0.7
-0.5
N.D.
+0.7
-0.1
carbon source
L-Arabinose
+0.5
+0.8
N.D.
+0.3
-0.5
carbon source
Sodium-DL-Lactate
+0.6
+0.6
N.D.
-0.3
+0.2
phage
K25
+0.4
-0.6
N.D.
+0.5
+0.8
phage
RB68
+0.5
-0.5
N.D.
+0.5
+1.1
carbon source
L-Rhamnose
+0.8
-0.0
N.D.
+0.2
+1.2
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