Fitness for 5 genes in Escherichia coli Nissle 1917

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500 ntECOLIN_RS30640 and ECOLIN_RS08550 are separated by 24 nucleotidesECOLIN_RS08550 and ECOLIN_RS08555 are separated by 377 nucleotidesECOLIN_RS08555 and ECOLIN_RS08560 are separated by 130 nucleotidesECOLIN_RS08560 and ECOLIN_RS08565 are separated by 155 nucleotides ECOLIN_RS30640: ECOLIN_RS30640 - oxygen-sensing cyclic-di-GMP phosphodiesterase DosP, at 1,678,265 to 1,680,666 _RS30640 ECOLIN_RS08550: ECOLIN_RS08550 - diguanylate cyclase, at 1,680,691 to 1,680,855 _RS08550 ECOLIN_RS08555: ECOLIN_RS08555 - glycoside hydrolase family 10 protein, at 1,681,233 to 1,682,552 _RS08555 ECOLIN_RS08560: ECOLIN_RS08560 - acid resistance gamma-aminobutyrate antiporter GadC, at 1,682,683 to 1,684,218 _RS08560 ECOLIN_RS08565: ECOLIN_RS08565 - glutamate decarboxylase, at 1,684,374 to 1,685,774 _RS08565
Group Condition ECOLIN_RS30640 ECOLIN_RS08550 ECOLIN_RS08555 ECOLIN_RS08560 ECOLIN_RS08565
phage Bas22 N.D. N.D. +0.5 -2.0 N.D.
phage CEV1 N.D. N.D. -0.5 -0.9 N.D.
no phage control Control_Nissle N.D. N.D. +0.4 -1.5 N.D.
phage Bas04 N.D. N.D. -0.2 -0.8 N.D.
phage Bas21 N.D. N.D. -0.4 -0.6 N.D.
phage Bas63 N.D. N.D. +0.6 -1.3 N.D.
phage Bas10 N.D. N.D. -0.7 +0.2 N.D.
phage Bas37 N.D. N.D. +0.4 -0.7 N.D.
carbon source D-Glucose N.D. N.D. +0.7 -1.1 N.D.
phage Bas63 N.D. N.D. +0.3 -0.6 N.D.
phage RB51 N.D. N.D. +0.4 -0.7 N.D.
phage K25 N.D. N.D. +0.4 -0.6 N.D.
phage Bas51 N.D. N.D. +0.6 -0.7 N.D.
phage RB68 N.D. N.D. +0.5 -0.5 N.D.
phage P1vir N.D. N.D. +0.6 -0.6 N.D.
phage K20 N.D. N.D. +0.7 -0.5 N.D.
carbon source Sodium-DL-Lactate N.D. N.D. +0.7 -0.2 N.D.
phage Bas31 N.D. N.D. -0.2 +0.8 N.D.
phage K20 N.D. N.D. +1.0 -0.4 N.D.
phage Bas22 N.D. N.D. +1.0 -0.3 N.D.
carbon source L-Rhamnose N.D. N.D. +0.8 -0.0 N.D.
phage Bas48 N.D. N.D. +0.5 +0.3 N.D.
no phage control Control_Nissle N.D. N.D. +0.9 -0.1 N.D.
phage Bas44 N.D. N.D. +0.2 +0.8 N.D.
carbon source Sodium-DL-Lactate N.D. N.D. +0.6 +0.6 N.D.
phage Bas48 N.D. N.D. +1.1 +0.1 N.D.
carbon source L-Arabinose N.D. N.D. +0.5 +0.8 N.D.
phage Bas52 N.D. N.D. +1.0 +0.2 N.D.
carbon source D-Glucose N.D. N.D. +0.8 +0.6 N.D.
carbon source L-Rhamnose N.D. N.D. +1.1 +0.7 N.D.
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