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Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS08515 and ECOLIN_RS08520 are separated by 185 nucleotides
ECOLIN_RS08520 and ECOLIN_RS08525 are separated by 133 nucleotides
ECOLIN_RS08525 and ECOLIN_RS08530 are separated by 156 nucleotides
ECOLIN_RS08530 and ECOLIN_RS08535 are separated by 101 nucleotides
ECOLIN_RS08515: ECOLIN_RS08515 - type II toxin-antitoxin system RelE/ParE family toxin, at 1,673,384 to 1,673,662
_RS08515
ECOLIN_RS08520: ECOLIN_RS08520 - alcohol dehydrogenase AdhP, at 1,673,848 to 1,674,858
_RS08520
ECOLIN_RS08525: ECOLIN_RS08525 - malate dehydrogenase, at 1,674,992 to 1,676,689
_RS08525
ECOLIN_RS08530: ECOLIN_RS08530 - stationary-phase-induced ribosome-associated protein, at 1,676,846 to 1,676,983
_RS08530
ECOLIN_RS08535: ECOLIN_RS08535 - biofilm-dependent modulation protein, at 1,677,085 to 1,677,300
_RS08535
Group
Condition
ECOLIN
_RS08515
ECOLIN
_RS08520
ECOLIN
_RS08525
ECOLIN
_RS08530
ECOLIN
_RS08535
carbon source
L-Rhamnose
-2.9
-0.4
N.D.
N.D.
N.D.
phage
Bas37
-1.1
-1.7
N.D.
N.D.
N.D.
phage
Bas31
-0.5
-1.5
N.D.
N.D.
N.D.
phage
EV219
-0.5
-1.5
N.D.
N.D.
N.D.
phage
Bas05
-0.2
-1.8
N.D.
N.D.
N.D.
phage
Bas04
-0.4
-1.6
N.D.
N.D.
N.D.
phage
TP7
-0.6
-1.3
N.D.
N.D.
N.D.
phage
Bas05
-1.1
-0.8
N.D.
N.D.
N.D.
phage
JK38
-0.5
-1.3
N.D.
N.D.
N.D.
phage
Bas38
-0.6
-1.1
N.D.
N.D.
N.D.
phage
TP7
-0.1
-1.7
N.D.
N.D.
N.D.
phage
Bas31
-0.2
-1.5
N.D.
N.D.
N.D.
phage
JK16
-0.4
-1.2
N.D.
N.D.
N.D.
phage
Phi92
-1.5
-0.2
N.D.
N.D.
N.D.
phage
Bas37
-0.1
-1.5
N.D.
N.D.
N.D.
phage
Bas27
+0.1
-1.7
N.D.
N.D.
N.D.
phage
Bas04
-0.2
-1.4
N.D.
N.D.
N.D.
carbon source
L-Rhamnose
+0.4
-1.9
N.D.
N.D.
N.D.
phage
Bas10
-0.1
-1.4
N.D.
N.D.
N.D.
phage
CEV1
-0.0
-1.4
N.D.
N.D.
N.D.
phage
Bas52
-0.8
-0.6
N.D.
N.D.
N.D.
phage
Bas48
-0.9
-0.6
N.D.
N.D.
N.D.
phage
EV219
-0.0
-1.4
N.D.
N.D.
N.D.
phage
Bas10
-0.0
-1.4
N.D.
N.D.
N.D.
phage
Bas27
-0.3
-1.1
N.D.
N.D.
N.D.
phage
Bas21
-0.2
-1.1
N.D.
N.D.
N.D.
phage
JK16
-0.1
-1.1
N.D.
N.D.
N.D.
phage
Bas68
-0.7
-0.5
N.D.
N.D.
N.D.
phage
K25
+1.1
-0.5
N.D.
N.D.
N.D.
carbon source
L-Arabinose
+1.0
-0.2
N.D.
N.D.
N.D.
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