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Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS07990 and ECOLIN_RS07995 are separated by 243 nucleotides
ECOLIN_RS07995 and ECOLIN_RS08000 are separated by 49 nucleotides
ECOLIN_RS08000 and ECOLIN_RS08005 are separated by 151 nucleotides
ECOLIN_RS08005 and ECOLIN_RS08010 are separated by 194 nucleotides
ECOLIN_RS07990: ECOLIN_RS07990 - low conductance mechanosensitive channel YnaI, at 1,563,666 to 1,564,697
_RS07990
ECOLIN_RS07995: ECOLIN_RS07995 - DUF2534 family protein, at 1,564,941 to 1,565,198
_RS07995
ECOLIN_RS08000: ECOLIN_RS08000 - universal stress protein UspE, at 1,565,248 to 1,566,198
_RS08000
ECOLIN_RS08005: ECOLIN_RS08005 - fumarate/nitrate reduction transcriptional regulator Fnr, at 1,566,350 to 1,567,102
_RS08005
ECOLIN_RS08010: ECOLIN_RS08010 - methylated-DNA--[protein]-cysteine S-methyltransferase, at 1,567,297 to 1,567,812
_RS08010
Group
Condition
ECOLIN
_RS07990
ECOLIN
_RS07995
ECOLIN
_RS08000
ECOLIN
_RS08005
ECOLIN
_RS08010
phage
K20
-2.5
N.D.
N.D.
+0.0
N.D.
phage
Bas04
-2.9
N.D.
N.D.
+0.5
N.D.
phage
Bas68
-2.0
N.D.
N.D.
-0.1
N.D.
phage
Bas04
-2.5
N.D.
N.D.
+0.5
N.D.
phage
P1vir
-2.4
N.D.
N.D.
+0.5
N.D.
carbon source
L-Rhamnose
-0.9
N.D.
N.D.
-0.6
N.D.
phage
K25
-1.5
N.D.
N.D.
+0.3
N.D.
phage
RB51
-0.8
N.D.
N.D.
-0.4
N.D.
phage
Bas68
-0.8
N.D.
N.D.
-0.3
N.D.
phage
Bas44
-0.7
N.D.
N.D.
-0.4
N.D.
phage
Bas31
-0.8
N.D.
N.D.
-0.2
N.D.
phage
K20
-1.1
N.D.
N.D.
+0.2
N.D.
phage
K25
-0.9
N.D.
N.D.
+0.4
N.D.
phage
Bas51
-0.7
N.D.
N.D.
+0.3
N.D.
carbon source
Sodium-DL-Lactate
-0.8
N.D.
N.D.
+0.4
N.D.
phage
RB68
-0.6
N.D.
N.D.
+0.3
N.D.
phage
Bas52
-0.6
N.D.
N.D.
+0.4
N.D.
carbon source
Casamino-acids
-0.8
N.D.
N.D.
+0.6
N.D.
phage
Bas10
-0.6
N.D.
N.D.
+0.6
N.D.
phage
Bas27
-0.6
N.D.
N.D.
+0.8
N.D.
phage
Bas38
-0.3
N.D.
N.D.
+0.8
N.D.
phage
Bas38
-0.4
N.D.
N.D.
+0.9
N.D.
phage
Bas10
+0.5
N.D.
N.D.
+0.6
N.D.
phage
EV219
+0.4
N.D.
N.D.
+0.7
N.D.
carbon source
L-Arabinose
+0.8
N.D.
N.D.
+0.3
N.D.
phage
Bas21
+0.6
N.D.
N.D.
+0.6
N.D.
phage
Bas37
+0.5
N.D.
N.D.
+0.7
N.D.
carbon source
L-Rhamnose
+0.9
N.D.
N.D.
+0.6
N.D.
phage
JK16
+0.6
N.D.
N.D.
+0.9
N.D.
phage
EV219
+0.9
N.D.
N.D.
+1.0
N.D.
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