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Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS07895 and ECOLIN_RS07900 are separated by 18 nucleotides
ECOLIN_RS07900 and ECOLIN_RS07905 are separated by 9 nucleotides
ECOLIN_RS07905 and ECOLIN_RS07910 overlap by 4 nucleotides
ECOLIN_RS07910 and ECOLIN_RS07915 overlap by 4 nucleotides
ECOLIN_RS07895: ECOLIN_RS07895 - zinc-binding alcohol dehydrogenase, at 1,543,132 to 1,544,184
_RS07895
ECOLIN_RS07900: ECOLIN_RS07900 - sugar phosphate isomerase/epimerase, at 1,544,203 to 1,544,991
_RS07900
ECOLIN_RS07905: ECOLIN_RS07905 - Gfo/Idh/MocA family oxidoreductase, at 1,545,001 to 1,546,056
_RS07905
ECOLIN_RS07910: ECOLIN_RS07910 - kojibiose phosphorylase, at 1,546,053 to 1,548,320
_RS07910
ECOLIN_RS07915: ECOLIN_RS07915 - beta-phosphoglucomutase, at 1,548,317 to 1,548,976
_RS07915
Group
Condition
ECOLIN
_RS07895
ECOLIN
_RS07900
ECOLIN
_RS07905
ECOLIN
_RS07910
ECOLIN
_RS07915
phage
K20
N.D.
N.D.
-2.6
-0.1
N.D.
phage
Bas10
N.D.
N.D.
-1.2
-0.6
N.D.
phage
RB51
N.D.
N.D.
-2.1
+0.5
N.D.
phage
Bas05
N.D.
N.D.
-1.6
+0.0
N.D.
phage
Bas22
N.D.
N.D.
-0.9
-0.4
N.D.
phage
Bas45
N.D.
N.D.
-0.5
-0.7
N.D.
phage
Bas04
N.D.
N.D.
-1.1
+0.0
N.D.
phage
JK16
N.D.
N.D.
-0.4
-0.3
N.D.
phage
K25
N.D.
N.D.
-0.6
-0.1
N.D.
phage
P1vir
N.D.
N.D.
+0.0
-0.6
N.D.
carbon source
L-Arabinose
N.D.
N.D.
-0.2
-0.4
N.D.
phage
Bas68
N.D.
N.D.
-0.3
-0.3
N.D.
phage
JK16
N.D.
N.D.
-0.7
+0.2
N.D.
phage
CEV1
N.D.
N.D.
+0.1
-0.6
N.D.
phage
K25
N.D.
N.D.
-0.5
+0.4
N.D.
carbon source
D-Glucose
N.D.
N.D.
+0.3
-0.4
N.D.
phage
TP7
N.D.
N.D.
+0.3
-0.4
N.D.
phage
RB68
N.D.
N.D.
+0.6
-0.5
N.D.
phage
Bas04
N.D.
N.D.
-0.3
+0.4
N.D.
phage
Bas48
N.D.
N.D.
-0.3
+0.5
N.D.
phage
Bas52
N.D.
N.D.
+0.5
+0.0
N.D.
phage
Bas38
N.D.
N.D.
+0.7
-0.1
N.D.
phage
Bas48
N.D.
N.D.
+0.4
+0.2
N.D.
phage
Bas22
N.D.
N.D.
+0.6
+0.2
N.D.
phage
Bas44
N.D.
N.D.
+0.6
+0.1
N.D.
carbon source
L-Rhamnose
N.D.
N.D.
+0.5
+0.3
N.D.
phage
Bas27
N.D.
N.D.
+0.8
+0.0
N.D.
carbon source
L-Rhamnose
N.D.
N.D.
+1.6
-0.4
N.D.
phage
Bas63
N.D.
N.D.
+0.6
+0.6
N.D.
phage
Bas21
N.D.
N.D.
+0.9
+0.3
N.D.
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