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Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS07885 and ECOLIN_RS07890 overlap by 14 nucleotides
ECOLIN_RS07890 and ECOLIN_RS07895 are separated by 30 nucleotides
ECOLIN_RS07895 and ECOLIN_RS07900 are separated by 18 nucleotides
ECOLIN_RS07900 and ECOLIN_RS07905 are separated by 9 nucleotides
ECOLIN_RS07885: ECOLIN_RS07885 - sugar ABC transporter permease, at 1,541,391 to 1,542,272
_RS07885
ECOLIN_RS07890: ECOLIN_RS07890 - carbohydrate ABC transporter permease, at 1,542,259 to 1,543,101
_RS07890
ECOLIN_RS07895: ECOLIN_RS07895 - zinc-binding alcohol dehydrogenase, at 1,543,132 to 1,544,184
_RS07895
ECOLIN_RS07900: ECOLIN_RS07900 - sugar phosphate isomerase/epimerase, at 1,544,203 to 1,544,991
_RS07900
ECOLIN_RS07905: ECOLIN_RS07905 - Gfo/Idh/MocA family oxidoreductase, at 1,545,001 to 1,546,056
_RS07905
Group
Condition
ECOLIN
_RS07885
ECOLIN
_RS07890
ECOLIN
_RS07895
ECOLIN
_RS07900
ECOLIN
_RS07905
phage
K25
-1.8
-1.1
N.D.
N.D.
-0.5
phage
JK16
-0.6
-1.3
N.D.
N.D.
-0.7
phage
K20
+0.4
-0.4
N.D.
N.D.
-2.6
phage
Bas52
-1.9
-0.9
N.D.
N.D.
+0.5
phage
K25
-0.7
-0.4
N.D.
N.D.
-0.6
phage
RB51
+0.3
+0.1
N.D.
N.D.
-2.1
phage
Bas05
+0.4
-0.4
N.D.
N.D.
-1.6
phage
Bas68
-0.6
-0.6
N.D.
N.D.
-0.5
phage
RB68
-1.6
-0.6
N.D.
N.D.
+0.6
phage
Bas22
-0.2
-0.3
N.D.
N.D.
-0.9
phage
Bas38
-0.5
-0.7
N.D.
N.D.
-0.1
phage
CEV1
+0.0
-1.2
N.D.
N.D.
+0.1
phage
Bas21
-0.8
-1.1
N.D.
N.D.
+0.9
phage
Bas05
-0.3
-0.8
N.D.
N.D.
+0.3
phage
Bas04
+0.4
-0.1
N.D.
N.D.
-1.1
phage
Bas63
+0.1
-0.9
N.D.
N.D.
+0.2
phage
Bas10
+1.0
-0.3
N.D.
N.D.
-1.2
phage
Bas63
+0.0
-0.9
N.D.
N.D.
+0.6
phage
Bas68
+0.6
-0.4
N.D.
N.D.
-0.3
phage
EV219
+0.4
-0.9
N.D.
N.D.
+0.4
phage
Bas38
+0.0
-0.6
N.D.
N.D.
+0.7
carbon source
Casamino-acids
+0.4
-0.3
N.D.
N.D.
+0.5
phage
CEV1
+0.4
-0.2
N.D.
N.D.
+0.5
carbon source
L-Arabinose
+0.4
+0.6
N.D.
N.D.
-0.2
phage
Bas22
+0.8
-0.2
N.D.
N.D.
+0.6
phage
Bas27
+0.5
-0.0
N.D.
N.D.
+0.8
phage
Bas44
+0.4
+0.4
N.D.
N.D.
+0.6
carbon source
L-Arabinose
+0.4
+0.9
N.D.
N.D.
+0.3
carbon source
L-Rhamnose
+0.3
-0.2
N.D.
N.D.
+1.6
carbon source
L-Rhamnose
+1.6
+0.8
N.D.
N.D.
+0.5
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