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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS07725 and ECOLIN_RS07730 are separated by 190 nucleotides
ECOLIN_RS07730 and ECOLIN_RS07735 overlap by 1 nucleotides
ECOLIN_RS07735 and ECOLIN_RS07740 are separated by 125 nucleotides
ECOLIN_RS07740 and ECOLIN_RS07745 are separated by 268 nucleotides
ECOLIN_RS07725: ECOLIN_RS07725 - lipopolysaccharide assembly protein LapB, at 1,510,343 to 1,511,512
_RS07725
ECOLIN_RS07730: ECOLIN_RS07730 - orotidine-5'-phosphate decarboxylase, at 1,511,703 to 1,512,440
_RS07730
ECOLIN_RS07735: ECOLIN_RS07735 - stress response translation initiation inhibitor YciH, at 1,512,440 to 1,512,766
_RS07735
ECOLIN_RS07740: ECOLIN_RS07740 - osmotically-inducible lipoprotein OsmB, at 1,512,892 to 1,513,110
_RS07740
ECOLIN_RS07745: ECOLIN_RS07745 - DNA-binding transcriptional regulator YciT, at 1,513,379 to 1,514,128
_RS07745
Group
Condition
ECOLIN
_RS07725
ECOLIN
_RS07730
ECOLIN
_RS07735
ECOLIN
_RS07740
ECOLIN
_RS07745
phage
Bas27
N.D.
N.D.
N.D.
N.D.
-3.4
carbon source
L-Rhamnose
N.D.
N.D.
N.D.
N.D.
-2.8
phage
Phi92
N.D.
N.D.
N.D.
N.D.
-2.4
phage
Bas04
N.D.
N.D.
N.D.
N.D.
-2.2
phage
Bas31
N.D.
N.D.
N.D.
N.D.
-1.8
no phage control
Control_Nissle
N.D.
N.D.
N.D.
N.D.
-1.5
phage
EV219
N.D.
N.D.
N.D.
N.D.
-1.4
phage
JK16
N.D.
N.D.
N.D.
N.D.
-1.2
phage
TP7
N.D.
N.D.
N.D.
N.D.
-1.1
phage
Bas10
N.D.
N.D.
N.D.
N.D.
-1.0
phage
Phi92
N.D.
N.D.
N.D.
N.D.
-0.9
phage
Bas04
N.D.
N.D.
N.D.
N.D.
-0.9
phage
Bas05
N.D.
N.D.
N.D.
N.D.
-0.9
phage
Bas31
N.D.
N.D.
N.D.
N.D.
-0.8
phage
Bas10
N.D.
N.D.
N.D.
N.D.
-0.7
phage
Bas21
N.D.
N.D.
N.D.
N.D.
-0.7
phage
Bas22
N.D.
N.D.
N.D.
N.D.
-0.7
phage
Bas27
N.D.
N.D.
N.D.
N.D.
-0.7
carbon source
L-Arabinose
N.D.
N.D.
N.D.
N.D.
+0.7
phage
Bas52
N.D.
N.D.
N.D.
N.D.
+0.7
phage
Bas44
N.D.
N.D.
N.D.
N.D.
+0.8
phage
RB51
N.D.
N.D.
N.D.
N.D.
+0.8
carbon source
Casamino-acids
N.D.
N.D.
N.D.
N.D.
+0.8
carbon source
Sodium-DL-Lactate
N.D.
N.D.
N.D.
N.D.
+0.9
phage
K20
N.D.
N.D.
N.D.
N.D.
+1.0
phage
Bas68
N.D.
N.D.
N.D.
N.D.
+1.0
phage
K25
N.D.
N.D.
N.D.
N.D.
+1.1
phage
Bas22
N.D.
N.D.
N.D.
N.D.
+1.5
carbon source
D-Glucose
N.D.
N.D.
N.D.
N.D.
+1.7
carbon source
L-Rhamnose
N.D.
N.D.
N.D.
N.D.
+2.2
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