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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS07410 and ECOLIN_RS07415 are separated by 111 nucleotides
ECOLIN_RS07415 and ECOLIN_RS07420 overlap by 4 nucleotides
ECOLIN_RS07420 and ECOLIN_RS07425 overlap by 23 nucleotides
ECOLIN_RS07425 and ECOLIN_RS07430 overlap by 4 nucleotides
ECOLIN_RS07410: ECOLIN_RS07410 - respiratory nitrate reductase subunit gamma, at 1,450,459 to 1,451,136
_RS07410
ECOLIN_RS07415: ECOLIN_RS07415 - 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein, at 1,451,248 to 1,452,255
_RS07415
ECOLIN_RS07420: ECOLIN_RS07420 - NAD(P)-dependent oxidoreductase, at 1,452,252 to 1,453,268
_RS07420
ECOLIN_RS07425: ECOLIN_RS07425 - MBL fold metallo-hydrolase, at 1,453,246 to 1,454,052
_RS07425
ECOLIN_RS07430: ECOLIN_RS07430 - F390 synthetase-related protein, at 1,454,049 to 1,455,335
_RS07430
Group
Condition
ECOLIN
_RS07410
ECOLIN
_RS07415
ECOLIN
_RS07420
ECOLIN
_RS07425
ECOLIN
_RS07430
phage
Bas48
N.D.
N.D.
N.D.
N.D.
-2.0
phage
Bas31
N.D.
N.D.
N.D.
N.D.
-1.8
phage
Bas44
N.D.
N.D.
N.D.
N.D.
-1.3
phage
Bas04
N.D.
N.D.
N.D.
N.D.
-1.3
phage
Bas31
N.D.
N.D.
N.D.
N.D.
-1.1
phage
Bas10
N.D.
N.D.
N.D.
N.D.
-1.1
phage
EV219
N.D.
N.D.
N.D.
N.D.
-1.0
phage
Bas37
N.D.
N.D.
N.D.
N.D.
-0.9
phage
Bas37
N.D.
N.D.
N.D.
N.D.
-0.8
phage
Bas21
N.D.
N.D.
N.D.
N.D.
-0.7
phage
Bas63
N.D.
N.D.
N.D.
N.D.
-0.6
carbon source
L-Rhamnose
N.D.
N.D.
N.D.
N.D.
-0.5
phage
Bas27
N.D.
N.D.
N.D.
N.D.
-0.5
phage
Phi92
N.D.
N.D.
N.D.
N.D.
-0.5
carbon source
L-Arabinose
N.D.
N.D.
N.D.
N.D.
-0.5
phage
TP7
N.D.
N.D.
N.D.
N.D.
-0.5
phage
Bas05
N.D.
N.D.
N.D.
N.D.
-0.5
phage
Bas38
N.D.
N.D.
N.D.
N.D.
-0.4
phage
Bas04
N.D.
N.D.
N.D.
N.D.
-0.4
phage
TP7
N.D.
N.D.
N.D.
N.D.
+0.4
phage
K20
N.D.
N.D.
N.D.
N.D.
+0.6
phage
K25
N.D.
N.D.
N.D.
N.D.
+0.6
phage
RB51
N.D.
N.D.
N.D.
N.D.
+0.6
carbon source
L-Arabinose
N.D.
N.D.
N.D.
N.D.
+0.6
no phage control
Control_Nissle
N.D.
N.D.
N.D.
N.D.
+0.9
carbon source
L-Rhamnose
N.D.
N.D.
N.D.
N.D.
+0.9
phage
Bas22
N.D.
N.D.
N.D.
N.D.
+1.1
phage
K20
N.D.
N.D.
N.D.
N.D.
+1.2
phage
Bas22
N.D.
N.D.
N.D.
N.D.
+1.2
phage
Bas63
N.D.
N.D.
N.D.
N.D.
+1.5
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