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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS07195 and ECOLIN_RS07200 are separated by 94 nucleotides
ECOLIN_RS07200 and ECOLIN_RS07205 are separated by 99 nucleotides
ECOLIN_RS07205 and ECOLIN_RS07210 are separated by 1 nucleotides
ECOLIN_RS07210 and ECOLIN_RS07215 are separated by 200 nucleotides
ECOLIN_RS07195: ECOLIN_RS07195 - potassium/proton antiporter, at 1,403,366 to 1,405,102
_RS07195
ECOLIN_RS07200: ECOLIN_RS07200 - muramoyltetrapeptide carboxypeptidase, at 1,405,197 to 1,406,111
_RS07200
ECOLIN_RS07205: ECOLIN_RS07205 - membrane-bound lytic murein transglycosylase EmtA, at 1,406,211 to 1,406,822
_RS07205
ECOLIN_RS07210: ECOLIN_RS07210 - flagellar brake protein, at 1,406,824 to 1,407,558
_RS07210
ECOLIN_RS07215: ECOLIN_RS07215 - GlsB/YeaQ/YmgE family stress response membrane protein, at 1,407,759 to 1,408,013
_RS07215
Group
Condition
ECOLIN
_RS07195
ECOLIN
_RS07200
ECOLIN
_RS07205
ECOLIN
_RS07210
ECOLIN
_RS07215
carbon source
L-Arabinose
-0.9
N.D.
N.D.
N.D.
N.D.
carbon source
L-Rhamnose
-0.4
N.D.
N.D.
N.D.
N.D.
phage
Phi92
-0.4
N.D.
N.D.
N.D.
N.D.
phage
K25
-0.3
N.D.
N.D.
N.D.
N.D.
phage
P1vir
+0.3
N.D.
N.D.
N.D.
N.D.
phage
Bas31
+0.3
N.D.
N.D.
N.D.
N.D.
phage
RB51
+0.3
N.D.
N.D.
N.D.
N.D.
phage
Bas68
+0.3
N.D.
N.D.
N.D.
N.D.
phage
Bas05
+0.4
N.D.
N.D.
N.D.
N.D.
phage
Bas51
+0.4
N.D.
N.D.
N.D.
N.D.
phage
Bas22
+0.4
N.D.
N.D.
N.D.
N.D.
phage
CEV1
+0.5
N.D.
N.D.
N.D.
N.D.
phage
JK38
+0.5
N.D.
N.D.
N.D.
N.D.
carbon source
Casamino-acids
+0.5
N.D.
N.D.
N.D.
N.D.
phage
Bas44
+0.5
N.D.
N.D.
N.D.
N.D.
phage
Bas05
+0.5
N.D.
N.D.
N.D.
N.D.
phage
Bas38
+0.5
N.D.
N.D.
N.D.
N.D.
phage
JK38
+0.5
N.D.
N.D.
N.D.
N.D.
carbon source
Casamino-acids
+0.6
N.D.
N.D.
N.D.
N.D.
phage
Bas37
+0.6
N.D.
N.D.
N.D.
N.D.
carbon source
Sodium-DL-Lactate
+0.7
N.D.
N.D.
N.D.
N.D.
phage
TP7
+0.7
N.D.
N.D.
N.D.
N.D.
carbon source
D-Glucose
+0.7
N.D.
N.D.
N.D.
N.D.
carbon source
L-Rhamnose
+0.8
N.D.
N.D.
N.D.
N.D.
phage
Bas44
+0.8
N.D.
N.D.
N.D.
N.D.
phage
Bas22
+0.8
N.D.
N.D.
N.D.
N.D.
phage
Bas31
+0.9
N.D.
N.D.
N.D.
N.D.
no phage control
Control_Nissle
+1.0
N.D.
N.D.
N.D.
N.D.
phage
TP7
+1.0
N.D.
N.D.
N.D.
N.D.
phage
CEV1
+1.2
N.D.
N.D.
N.D.
N.D.
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