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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS06865 and ECOLIN_RS06870 are separated by 317 nucleotides
ECOLIN_RS06870 and ECOLIN_RS06875 overlap by 29 nucleotides
ECOLIN_RS06875 and ECOLIN_RS06880 overlap by 17 nucleotides
ECOLIN_RS06880 and ECOLIN_RS06885 overlap by 4 nucleotides
ECOLIN_RS06865: ECOLIN_RS06865 - terminase small subunit, at 1,350,271 to 1,350,537
_RS06865
ECOLIN_RS06870: ECOLIN_RS06870 - terminase small subunit, at 1,350,855 to 1,351,403
_RS06870
ECOLIN_RS06875: ECOLIN_RS06875 - phage terminase large subunit family protein, at 1,351,375 to 1,353,303
_RS06875
ECOLIN_RS06880: ECOLIN_RS06880 - phage head-stabilizing protein, at 1,353,287 to 1,353,493
_RS06880
ECOLIN_RS06885: ECOLIN_RS06885 - phage portal protein, at 1,353,490 to 1,355,082
_RS06885
Group
Condition
ECOLIN
_RS06865
ECOLIN
_RS06870
ECOLIN
_RS06875
ECOLIN
_RS06880
ECOLIN
_RS06885
phage
Bas38
N.D.
N.D.
-0.5
N.D.
-0.4
phage
RB51
N.D.
N.D.
-0.4
N.D.
-0.5
phage
Bas22
N.D.
N.D.
-0.5
N.D.
-0.2
phage
TP7
N.D.
N.D.
-0.2
N.D.
-0.4
phage
JK16
N.D.
N.D.
-0.1
N.D.
-0.5
phage
EV219
N.D.
N.D.
-0.4
N.D.
-0.2
phage
P1vir
N.D.
N.D.
-0.4
N.D.
-0.1
carbon source
L-Rhamnose
N.D.
N.D.
-0.4
N.D.
-0.1
phage
CEV1
N.D.
N.D.
-0.5
N.D.
+0.0
phage
Bas63
N.D.
N.D.
-0.5
N.D.
+0.1
phage
Bas21
N.D.
N.D.
-0.5
N.D.
+0.5
phage
Bas52
N.D.
N.D.
-0.4
N.D.
+0.3
carbon source
Sodium-DL-Lactate
N.D.
N.D.
-0.3
N.D.
+0.4
phage
Bas05
N.D.
N.D.
-0.3
N.D.
+0.5
phage
Bas37
N.D.
N.D.
-0.2
N.D.
+0.5
phage
Bas04
N.D.
N.D.
-0.2
N.D.
+0.5
phage
TP7
N.D.
N.D.
-0.1
N.D.
+0.4
phage
Bas21
N.D.
N.D.
-0.1
N.D.
+0.5
no phage control
Control_Nissle
N.D.
N.D.
+0.2
N.D.
+0.2
phage
Bas04
N.D.
N.D.
+0.0
N.D.
+0.4
phage
Phi92
N.D.
N.D.
+0.5
N.D.
-0.0
phage
Bas37
N.D.
N.D.
+0.2
N.D.
+0.5
carbon source
Casamino-acids
N.D.
N.D.
+0.3
N.D.
+0.4
phage
JK16
N.D.
N.D.
+0.1
N.D.
+0.6
carbon source
Casamino-acids
N.D.
N.D.
+0.2
N.D.
+0.5
carbon source
L-Arabinose
N.D.
N.D.
+0.2
N.D.
+0.6
phage
RB68
N.D.
N.D.
+0.2
N.D.
+0.7
carbon source
D-Glucose
N.D.
N.D.
+0.3
N.D.
+0.6
phage
Bas27
N.D.
N.D.
+0.3
N.D.
+0.7
carbon source
L-Rhamnose
N.D.
N.D.
+0.4
N.D.
+1.2
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