Fitness for 5 genes in Escherichia coli Nissle 1917

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500 ntECOLIN_RS06335 and ECOLIN_RS06340 overlap by 11 nucleotidesECOLIN_RS06340 and ECOLIN_RS06345 overlap by 4 nucleotidesECOLIN_RS06345 and ECOLIN_RS06350 are separated by 10 nucleotidesECOLIN_RS06350 and ECOLIN_RS06355 are separated by 294 nucleotides ECOLIN_RS06335: ECOLIN_RS06335 - cell division protein YceG, at 1,273,815 to 1,274,838 _RS06335 ECOLIN_RS06340: ECOLIN_RS06340 - dTMP kinase, at 1,274,828 to 1,275,469 _RS06340 ECOLIN_RS06345: ECOLIN_RS06345 - DNA polymerase III subunit delta', at 1,275,466 to 1,276,470 _RS06345 ECOLIN_RS06350: ECOLIN_RS06350 - metal-dependent hydrolase, at 1,276,481 to 1,277,278 _RS06350 ECOLIN_RS06355: ECOLIN_RS06355 - PTS glucose transporter subunit IIBC, at 1,277,573 to 1,279,006 _RS06355
Group Condition ECOLIN_RS06335 ECOLIN_RS06340 ECOLIN_RS06345 ECOLIN_RS06350 ECOLIN_RS06355
phage P1vir +0.6 N.D. N.D. -2.6 -1.3
carbon source L-Rhamnose +0.1 N.D. N.D. -3.0 +0.0
phage Bas63 -0.5 N.D. N.D. -0.6 -1.4
no phage control Control_Nissle -0.9 N.D. N.D. -0.8 -0.4
phage K25 -0.6 N.D. N.D. -0.8 -0.6
phage Bas52 -0.6 N.D. N.D. -1.1 -0.1
phage K20 -0.4 N.D. N.D. -0.6 -0.8
phage Bas52 -0.4 N.D. N.D. +0.4 -1.5
phage Bas37 +1.8 N.D. N.D. -1.5 -1.3
phage Bas22 +0.7 N.D. N.D. -0.9 -0.6
phage CEV1 +0.7 N.D. N.D. -1.0 -0.4
carbon source L-Rhamnose -1.3 N.D. N.D. +1.4 -0.3
phage EV219 +1.6 N.D. N.D. -0.7 -1.0
phage Bas22 +0.6 N.D. N.D. -1.0 +0.3
phage Bas31 +1.4 N.D. N.D. -0.1 -1.3
phage Bas31 +1.3 N.D. N.D. -0.3 -1.0
phage JK38 +1.2 N.D. N.D. -0.3 -0.6
phage Bas38 +2.7 N.D. N.D. -0.9 -1.4
phage Bas37 +1.7 N.D. N.D. -0.8 -0.1
phage JK38 +1.8 N.D. N.D. -0.0 -1.0
phage TP7 +2.6 N.D. N.D. -0.4 -1.1
phage EV219 +2.4 N.D. N.D. -0.2 -1.1
phage Bas38 +3.1 N.D. N.D. -0.5 -1.2
phage TP7 +2.5 N.D. N.D. +0.0 -1.0
phage Bas45 +2.6 N.D. N.D. +0.4 -1.2
carbon source D-Glucose +0.7 N.D. N.D. +0.7 +0.6
carbon source L-Arabinose -0.2 N.D. N.D. +1.6 +0.8
carbon source D-Glucose +0.5 N.D. N.D. +1.6 +0.7
phage Bas21 +2.9 N.D. N.D. -1.4 +2.0
phage Bas21 +3.0 N.D. N.D. -0.9 +2.2
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