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Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS32270 and ECOLIN_RS05395 are separated by 66 nucleotides
ECOLIN_RS05395 and ECOLIN_RS05400 are separated by 25 nucleotides
ECOLIN_RS05400 and ECOLIN_RS33360 are separated by 84 nucleotides
ECOLIN_RS33360 and ECOLIN_RS33365 overlap by 2 nucleotides
ECOLIN_RS32270: ECOLIN_RS32270 - hypothetical protein, at 1,108,719 to 1,109,048
_RS32270
ECOLIN_RS05395: ECOLIN_RS05395 - enterotoxin, at 1,109,115 to 1,111,004
_RS05395
ECOLIN_RS05400: ECOLIN_RS05400 - PatB family C-S lyase, at 1,111,030 to 1,112,193
_RS05400
ECOLIN_RS33360: ECOLIN_RS33360 - class II fructose-bisphosphate aldolase, at 1,112,278 to 1,112,427
_RS33360
ECOLIN_RS33365: ECOLIN_RS33365 - class II fructose-bisphosphate aldolase, at 1,112,426 to 1,112,596
_RS33365
Group
Condition
ECOLIN
_RS32270
ECOLIN
_RS05395
ECOLIN
_RS05400
ECOLIN
_RS33360
ECOLIN
_RS33365
phage
Phi92
N.D.
-0.9
N.D.
-0.0
N.D.
phage
Bas10
N.D.
-0.3
N.D.
-0.4
N.D.
phage
Bas27
N.D.
+0.0
N.D.
-0.6
N.D.
phage
JK16
N.D.
+0.0
N.D.
-0.7
N.D.
phage
Bas04
N.D.
-0.5
N.D.
-0.0
N.D.
phage
Bas31
N.D.
-0.3
N.D.
-0.2
N.D.
carbon source
L-Rhamnose
N.D.
-0.4
N.D.
+0.2
N.D.
phage
Bas21
N.D.
-0.3
N.D.
+0.2
N.D.
phage
CEV1
N.D.
-0.8
N.D.
+0.7
N.D.
phage
Bas21
N.D.
-0.4
N.D.
+0.3
N.D.
carbon source
Casamino-acids
N.D.
+0.3
N.D.
-0.2
N.D.
phage
TP7
N.D.
-0.2
N.D.
+0.4
N.D.
phage
P1vir
N.D.
-0.3
N.D.
+0.5
N.D.
phage
RB51
N.D.
-0.1
N.D.
+0.6
N.D.
phage
Bas52
N.D.
+0.3
N.D.
+0.3
N.D.
carbon source
D-Glucose
N.D.
+0.7
N.D.
-0.1
N.D.
phage
K25
N.D.
+0.1
N.D.
+0.5
N.D.
phage
Bas48
N.D.
+0.1
N.D.
+0.5
N.D.
no phage control
Control_Nissle
N.D.
+0.5
N.D.
+0.1
N.D.
phage
Bas63
N.D.
-0.1
N.D.
+0.7
N.D.
phage
Bas22
N.D.
+0.5
N.D.
+0.2
N.D.
phage
K20
N.D.
+0.4
N.D.
+0.3
N.D.
phage
RB51
N.D.
+0.0
N.D.
+0.7
N.D.
phage
Bas48
N.D.
+0.1
N.D.
+0.7
N.D.
phage
EV219
N.D.
+0.5
N.D.
+0.3
N.D.
phage
Bas68
N.D.
+0.3
N.D.
+0.5
N.D.
phage
K20
N.D.
+0.4
N.D.
+0.3
N.D.
phage
Bas22
N.D.
+0.3
N.D.
+0.5
N.D.
phage
Bas44
N.D.
+0.5
N.D.
+0.3
N.D.
phage
Bas51
N.D.
+0.2
N.D.
+0.7
N.D.
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