Fitness for 5 genes in Escherichia coli Nissle 1917

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500 ntECOLIN_RS04560 and ECOLIN_RS04565 overlap by 4 nucleotidesECOLIN_RS04565 and ECOLIN_RS04570 are separated by 59 nucleotidesECOLIN_RS04570 and ECOLIN_RS04575 are separated by 40 nucleotidesECOLIN_RS04575 and ECOLIN_RS04580 are separated by 28 nucleotides ECOLIN_RS04560: ECOLIN_RS04560 - putrescine ABC transporter permease PotH, at 923,183 to 924,127 _RS04560 ECOLIN_RS04565: ECOLIN_RS04565 - putrescine ABC transporter permease PotI, at 924,124 to 924,969 _RS04565 ECOLIN_RS04570: ECOLIN_RS04570 - YbjO family protein, at 925,029 to 925,517 _RS04570 ECOLIN_RS04575: ECOLIN_RS04575 - 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC, at 925,558 to 926,685 _RS04575 ECOLIN_RS04580: ECOLIN_RS04580 - arginine ABC transporter substrate-binding protein ArtJ, at 926,714 to 927,445 _RS04580
Group Condition ECOLIN_RS04560 ECOLIN_RS04565 ECOLIN_RS04570 ECOLIN_RS04575 ECOLIN_RS04580
phage P1vir +0.1 N.D. N.D. -1.2 -0.3
phage Bas45 -0.3 N.D. N.D. -0.5 -0.5
phage Bas63 +0.2 N.D. N.D. -0.6 -0.8
carbon source D-Glucose -0.5 N.D. N.D. -0.3 +0.2
carbon source Casamino-acids +0.2 N.D. N.D. +0.1 -0.9
phage K20 +0.8 N.D. N.D. -0.4 -0.9
carbon source L-Rhamnose -0.5 N.D. N.D. +0.4 -0.4
phage Bas44 +0.7 N.D. N.D. -0.1 -0.8
phage Bas52 +0.5 N.D. N.D. -0.4 -0.3
phage EV219 +0.3 N.D. N.D. +0.3 -0.6
phage K20 +0.6 N.D. N.D. -0.4 -0.3
phage Bas51 +0.5 N.D. N.D. -0.7 +0.5
phage Bas05 +0.0 N.D. N.D. +1.0 -0.5
carbon source L-Rhamnose -0.7 N.D. N.D. +0.8 +0.4
phage K25 +0.9 N.D. N.D. +0.1 -0.4
no phage control Control_Nissle +0.9 N.D. N.D. -0.4 +0.1
phage K25 +0.7 N.D. N.D. -0.3 +0.4
phage Bas04 -0.1 N.D. N.D. +0.6 +0.6
phage TP7 -0.2 N.D. N.D. +0.5 +0.7
phage Bas21 +0.6 N.D. N.D. +0.2 +0.4
phage Bas21 -0.0 N.D. N.D. +0.1 +1.0
phage CEV1 +0.2 N.D. N.D. +0.7 +0.2
phage Bas52 +0.8 N.D. N.D. +0.2 +0.2
phage Bas38 +0.7 N.D. N.D. +0.2 +0.4
phage CEV1 -0.0 N.D. N.D. +0.7 +0.7
phage Bas37 +0.4 N.D. N.D. +0.1 +0.8
phage JK38 +0.5 N.D. N.D. +0.3 +0.6
phage Bas27 +0.5 N.D. N.D. +0.8 +0.2
phage Bas37 +0.1 N.D. N.D. +0.8 +0.8
phage Bas27 +0.7 N.D. N.D. +0.4 +0.7
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