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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS03930 and ECOLIN_RS03935 are separated by 64 nucleotides
ECOLIN_RS03935 and ECOLIN_RS03940 are separated by 132 nucleotides
ECOLIN_RS03940 and ECOLIN_RS03945 are separated by 34 nucleotides
ECOLIN_RS03945 and ECOLIN_RS03950 are separated by 9 nucleotides
ECOLIN_RS03930: ECOLIN_RS03930 - colicin uptake protein TolR, at 803,628 to 804,056
_RS03930
ECOLIN_RS03935: ECOLIN_RS03935 - cell envelope integrity protein TolA, at 804,121 to 805,386
_RS03935
ECOLIN_RS03940: ECOLIN_RS03940 - Tol-Pal system beta propeller repeat protein TolB, at 805,519 to 806,811
_RS03940
ECOLIN_RS03945: ECOLIN_RS03945 - peptidoglycan-associated lipoprotein Pal, at 806,846 to 807,367
_RS03945
ECOLIN_RS03950: ECOLIN_RS03950 - cell division protein CpoB, at 807,377 to 808,169
_RS03950
Group
Condition
ECOLIN
_RS03930
ECOLIN
_RS03935
ECOLIN
_RS03940
ECOLIN
_RS03945
ECOLIN
_RS03950
carbon source
L-Arabinose
-6.6
-6.0
-7.1
-7.8
-0.6
phage
TP7
-6.5
-6.2
-8.4
-6.6
+1.2
carbon source
D-Glucose
-6.8
-5.6
-5.1
-7.9
-0.4
phage
Bas37
-5.8
-5.5
-7.8
-7.4
+0.9
phage
Bas37
-6.1
-5.8
-6.8
-6.3
+0.7
phage
TP7
-6.0
-5.7
-6.7
-6.3
+1.2
carbon source
Sodium-DL-Lactate
-7.0
-6.3
-4.2
-5.4
-0.2
phage
JK38
-6.1
-5.8
-8.0
-3.9
+0.9
phage
JK38
-4.8
-5.9
-6.1
-6.4
+0.9
carbon source
Casamino-acids
-6.8
-4.2
-6.1
-3.7
-0.5
carbon source
L-Arabinose
-2.9
-4.4
-6.7
-6.1
-0.4
carbon source
Sodium-DL-Lactate
-6.5
-5.8
-2.7
-4.5
-0.4
phage
Bas31
-5.0
-5.0
-6.2
-3.1
+0.6
phage
EV219
-5.9
-5.1
-3.6
-3.4
+0.9
phage
Phi92
-2.2
-3.5
-5.6
-5.2
+0.4
phage
P1vir
-3.7
-3.2
-4.5
-4.5
+0.3
phage
EV219
-4.5
-4.2
-4.9
-2.6
+1.0
phage
Bas10
-6.0
-4.6
-3.2
-2.1
+0.6
carbon source
Casamino-acids
-3.6
-5.2
-4.8
-1.5
+0.1
phage
Bas27
-5.3
-3.4
-3.3
-1.7
-0.2
phage
Bas10
-2.5
-4.7
-3.6
-3.0
+0.4
phage
Bas05
-2.8
-5.7
-3.1
-2.0
+0.4
phage
JK16
-4.1
-5.2
-2.8
-0.8
-0.1
phage
Bas31
-4.0
-2.9
-3.8
-2.4
+0.3
phage
Bas05
-4.2
-2.9
-3.6
-2.4
+0.4
phage
Bas45
-2.8
-2.4
-3.0
-4.9
+0.7
phage
JK16
-5.0
-2.2
-1.9
-2.2
+0.3
phage
Bas27
-3.0
-1.9
-4.1
-1.6
+0.7
carbon source
L-Rhamnose
-3.9
-2.7
-1.6
-1.6
+0.2
phage
Phi92
-2.2
-2.1
-3.2
-1.9
+0.9
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