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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS03015 and ECOLIN_RS03020 overlap by 4 nucleotides
ECOLIN_RS03020 and ECOLIN_RS03025 are separated by 132 nucleotides
ECOLIN_RS03025 and ECOLIN_RS03030 overlap by 4 nucleotides
ECOLIN_RS03030 and ECOLIN_RS03035 are separated by 95 nucleotides
ECOLIN_RS03015: ECOLIN_RS03015 - DUF2877 domain-containing protein, at 623,544 to 624,359
_RS03015
ECOLIN_RS03020: ECOLIN_RS03020 - carbamate kinase, at 624,356 to 625,249
_RS03020
ECOLIN_RS03025: ECOLIN_RS03025 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 625,382 to 626,449
_RS03025
ECOLIN_RS03030: ECOLIN_RS03030 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 626,446 to 626,955
_RS03030
ECOLIN_RS03035: ECOLIN_RS03035 - hypothetical protein, at 627,051 to 627,380
_RS03035
Group
Condition
ECOLIN
_RS03015
ECOLIN
_RS03020
ECOLIN
_RS03025
ECOLIN
_RS03030
ECOLIN
_RS03035
carbon source
Casamino-acids
-0.1
+0.5
-6.8
N.D.
-1.1
carbon source
Casamino-acids
-0.6
+0.2
-3.9
N.D.
-0.5
carbon source
Sodium-DL-Lactate
+0.8
-0.0
-3.2
N.D.
-0.9
carbon source
Sodium-DL-Lactate
-0.4
-0.1
-1.3
N.D.
-0.7
phage
Bas05
-1.3
-0.1
-1.1
N.D.
+0.1
phage
Bas63
-0.5
+0.1
-0.4
N.D.
-0.9
phage
RB51
-2.6
+0.2
+0.9
N.D.
-0.3
phage
Bas05
-0.9
-0.4
-1.0
N.D.
+0.7
phage
Bas27
-2.1
-0.1
-0.3
N.D.
+1.0
phage
Bas52
-1.2
+0.1
+0.0
N.D.
-0.3
phage
JK16
-1.3
-0.1
-0.5
N.D.
+0.5
phage
CEV1
-1.0
-0.6
+0.1
N.D.
+0.4
phage
Bas10
-1.5
+0.0
-0.0
N.D.
+0.4
phage
Bas10
-1.7
+0.1
-0.1
N.D.
+0.8
phage
JK38
-1.2
-0.2
-0.1
N.D.
+0.9
phage
Bas52
+0.5
-0.2
+0.2
N.D.
-1.0
phage
K20
-1.1
+0.1
+0.6
N.D.
-0.1
phage
Bas04
-0.9
-0.2
+0.4
N.D.
+0.5
phage
TP7
-0.9
-0.3
+0.1
N.D.
+1.0
carbon source
L-Rhamnose
+0.9
+0.7
-0.1
N.D.
-1.3
phage
Bas27
-0.5
-0.5
+0.3
N.D.
+1.0
phage
K25
+0.7
-0.1
+0.4
N.D.
-0.6
carbon source
L-Arabinose
-0.4
-0.0
+1.1
N.D.
-0.2
phage
JK16
+0.6
-0.3
-0.3
N.D.
+0.5
carbon source
D-Glucose
-1.1
-0.2
+2.3
N.D.
-0.2
carbon source
L-Arabinose
-0.4
+0.2
+1.8
N.D.
-0.2
phage
RB51
+1.4
+0.2
+0.3
N.D.
-0.3
phage
Bas22
+0.9
+0.3
+0.7
N.D.
-0.2
carbon source
L-Rhamnose
+2.1
-0.7
+0.7
N.D.
+0.8
carbon source
D-Glucose
+0.3
-0.0
+2.4
N.D.
+0.8
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