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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS02970 and ECOLIN_RS02975 are separated by 59 nucleotides
ECOLIN_RS02975 and ECOLIN_RS02980 are separated by 55 nucleotides
ECOLIN_RS02980 and ECOLIN_RS02985 are separated by 21 nucleotides
ECOLIN_RS02985 and ECOLIN_RS02990 are separated by 128 nucleotides
ECOLIN_RS02970: ECOLIN_RS02970 - putative allantoin permease, at 611,650 to 613,104
_RS02970
ECOLIN_RS02975: ECOLIN_RS02975 - allantoinase AllB, at 613,164 to 614,525
_RS02975
ECOLIN_RS02980: ECOLIN_RS02980 - uracil/xanthine transporter, at 614,581 to 615,882
_RS02980
ECOLIN_RS02985: ECOLIN_RS02985 - glycerate 3-kinase, at 615,904 to 617,049
_RS02985
ECOLIN_RS02990: ECOLIN_RS02990 - (S)-ureidoglycine aminohydrolase, at 617,178 to 617,963
_RS02990
Group
Condition
ECOLIN
_RS02970
ECOLIN
_RS02975
ECOLIN
_RS02980
ECOLIN
_RS02985
ECOLIN
_RS02990
carbon source
D-Glucose
-0.6
-0.3
-0.8
-0.1
N.D.
phage
RB68
-0.1
-0.2
-0.2
-1.3
N.D.
phage
Bas63
-0.4
-0.2
-0.1
-1.1
N.D.
phage
Bas45
-0.2
-0.7
-0.3
-0.5
N.D.
phage
Bas05
+0.1
-0.2
-0.9
-0.5
N.D.
carbon source
D-Glucose
-0.3
-0.3
-0.9
+0.0
N.D.
carbon source
L-Arabinose
+0.2
-0.2
-0.6
-0.7
N.D.
no phage control
Control_Nissle
+0.7
+0.3
+0.5
-2.6
N.D.
phage
Bas38
-0.1
+0.5
-0.4
-1.1
N.D.
phage
Bas48
-0.5
-0.4
+0.9
-0.8
N.D.
phage
Bas10
-0.2
-0.1
-1.2
+0.7
N.D.
phage
Bas21
-0.5
-0.2
-0.4
+0.3
N.D.
phage
JK38
-0.6
+0.3
-0.5
+0.2
N.D.
phage
TP7
-1.3
+0.1
-0.1
+0.8
N.D.
phage
Bas21
+0.1
-0.4
-0.6
+0.4
N.D.
carbon source
L-Rhamnose
+0.0
+0.4
+0.4
-1.3
N.D.
phage
Bas52
-0.7
+0.1
+0.7
-0.4
N.D.
phage
Bas68
+0.1
-0.3
+0.5
-0.6
N.D.
phage
K25
-0.8
-0.1
+0.8
-0.0
N.D.
phage
Bas10
+0.3
-0.2
-0.6
+0.6
N.D.
phage
Bas31
+0.2
-0.1
-0.6
+0.7
N.D.
phage
EV219
+0.4
-0.2
-0.4
+0.5
N.D.
carbon source
L-Rhamnose
+0.4
-0.2
-1.0
+1.0
N.D.
phage
Bas63
+0.5
-0.1
+0.4
-0.5
N.D.
phage
Bas05
-0.3
-0.3
+0.3
+0.7
N.D.
phage
Bas27
+0.3
-0.2
-0.3
+0.6
N.D.
phage
CEV1
-0.3
-0.3
+0.5
+0.7
N.D.
phage
Bas52
+0.2
+0.0
+0.8
+0.4
N.D.
phage
Phi92
+0.2
+0.5
+0.4
+0.4
N.D.
phage
Bas04
+0.4
+0.1
+0.5
+0.7
N.D.
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