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Protein
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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS02960 and ECOLIN_RS02965 are separated by 99 nucleotides
ECOLIN_RS02965 and ECOLIN_RS02970 are separated by 169 nucleotides
ECOLIN_RS02970 and ECOLIN_RS02975 are separated by 59 nucleotides
ECOLIN_RS02975 and ECOLIN_RS02980 are separated by 55 nucleotides
ECOLIN_RS02960: ECOLIN_RS02960 - hydroxypyruvate isomerase, at 609,726 to 610,502
_RS02960
ECOLIN_RS02965: ECOLIN_RS02965 - 2-hydroxy-3-oxopropionate reductase, at 610,602 to 611,480
_RS02965
ECOLIN_RS02970: ECOLIN_RS02970 - putative allantoin permease, at 611,650 to 613,104
_RS02970
ECOLIN_RS02975: ECOLIN_RS02975 - allantoinase AllB, at 613,164 to 614,525
_RS02975
ECOLIN_RS02980: ECOLIN_RS02980 - uracil/xanthine transporter, at 614,581 to 615,882
_RS02980
Group
Condition
ECOLIN
_RS02960
ECOLIN
_RS02965
ECOLIN
_RS02970
ECOLIN
_RS02975
ECOLIN
_RS02980
carbon source
L-Rhamnose
-0.3
-2.3
+0.4
-0.2
-1.0
phage
TP7
-0.3
-0.6
-1.3
+0.1
-0.1
phage
Bas45
-0.9
-0.2
-0.2
-0.7
-0.3
phage
Bas10
-0.4
+0.2
-0.2
-0.1
-1.2
phage
CEV1
+0.3
-1.0
-0.4
-0.3
-0.0
phage
Bas27
-0.5
-0.6
+0.3
-0.2
-0.3
phage
K20
-1.1
-0.2
+0.3
-0.1
+0.1
phage
Bas05
+0.5
-0.6
+0.1
-0.2
-0.9
phage
Bas48
-1.3
+0.2
-0.2
+0.2
+0.1
phage
Bas68
-1.2
-0.1
+0.4
-0.2
+0.1
phage
Bas48
-0.5
-0.3
-0.5
-0.4
+0.9
phage
JK16
-0.3
+0.9
-0.5
-0.1
-0.7
no phage control
Control_Nissle
-0.6
+0.3
-0.5
-0.1
+0.5
phage
Bas10
-0.3
+0.5
+0.3
-0.2
-0.6
phage
JK38
+0.2
+0.2
-0.6
+0.3
-0.5
phage
K25
-0.3
+0.3
-0.8
-0.1
+0.8
phage
K25
-0.6
+0.8
-0.4
+0.0
+0.1
phage
Bas63
-1.2
+0.4
+0.5
-0.1
+0.4
carbon source
D-Glucose
+0.8
+0.7
-0.3
-0.3
-0.9
phage
Bas04
+0.7
+0.5
-0.5
-0.2
-0.2
phage
Bas52
+0.3
+0.1
-0.7
+0.1
+0.7
phage
Bas52
-0.7
+0.3
+0.2
+0.0
+0.8
carbon source
D-Glucose
+1.4
+1.1
-0.6
-0.3
-0.8
carbon source
Sodium-DL-Lactate
+0.4
+0.9
-0.4
-0.1
+0.3
carbon source
L-Arabinose
+0.6
+1.1
+0.2
-0.2
-0.6
phage
EV219
-0.1
+0.6
-0.1
-0.1
+0.9
phage
Bas22
-0.3
+1.2
+0.1
-0.1
+0.4
no phage control
Control_Nissle
-0.7
+1.1
+0.7
+0.3
+0.5
phage
Bas22
+0.2
+1.2
+0.7
+0.1
-0.2
carbon source
L-Rhamnose
+0.8
+0.4
+0.0
+0.4
+0.4
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