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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS02945 and ECOLIN_RS02950 are separated by 77 nucleotides
ECOLIN_RS02950 and ECOLIN_RS02955 are separated by 89 nucleotides
ECOLIN_RS02955 and ECOLIN_RS02960 are separated by 12 nucleotides
ECOLIN_RS02960 and ECOLIN_RS02965 are separated by 99 nucleotides
ECOLIN_RS02945: ECOLIN_RS02945 - ureidoglycolate lyase, at 606,467 to 606,949
_RS02945
ECOLIN_RS02950: ECOLIN_RS02950 - HTH-type transcriptional repressor AllR, at 607,027 to 607,842
_RS02950
ECOLIN_RS02955: ECOLIN_RS02955 - glyoxylate carboligase, at 607,932 to 609,713
_RS02955
ECOLIN_RS02960: ECOLIN_RS02960 - hydroxypyruvate isomerase, at 609,726 to 610,502
_RS02960
ECOLIN_RS02965: ECOLIN_RS02965 - 2-hydroxy-3-oxopropionate reductase, at 610,602 to 611,480
_RS02965
Group
Condition
ECOLIN
_RS02945
ECOLIN
_RS02950
ECOLIN
_RS02955
ECOLIN
_RS02960
ECOLIN
_RS02965
carbon source
L-Rhamnose
N.D.
-0.0
+0.2
-0.3
-2.3
phage
Bas68
N.D.
-0.3
+0.1
-1.2
-0.1
phage
K20
N.D.
-0.1
+0.1
-1.1
-0.2
phage
Bas27
N.D.
-0.4
+0.2
-0.5
-0.6
phage
Bas48
N.D.
-0.3
+0.1
-1.3
+0.2
phage
CEV1
N.D.
-0.5
+0.0
+0.3
-1.0
phage
TP7
N.D.
-0.1
+0.2
-0.3
-0.6
phage
Bas45
N.D.
-0.1
+0.4
-0.9
-0.2
phage
Bas63
N.D.
+0.0
+0.2
-1.2
+0.4
phage
Bas52
N.D.
-0.1
+0.3
-0.7
+0.3
phage
Bas38
N.D.
-0.6
+0.3
+0.3
-0.2
carbon source
L-Arabinose
N.D.
-0.5
+0.1
-0.4
+0.6
no phage control
Control_Nissle
N.D.
-0.4
+0.0
-0.7
+1.1
phage
Bas05
N.D.
-0.3
+0.5
+0.5
-0.6
phage
Phi92
N.D.
-0.4
+0.4
+0.4
+0.2
phage
JK16
N.D.
-0.3
+0.2
-0.3
+0.9
phage
EV219
N.D.
-0.2
+0.3
-0.1
+0.6
phage
K25
N.D.
+0.2
+0.4
-0.6
+0.8
phage
JK38
N.D.
-0.4
+0.3
+0.2
+0.7
carbon source
Sodium-DL-Lactate
N.D.
-0.2
-0.3
+0.4
+0.9
carbon source
D-Glucose
N.D.
-0.6
+0.0
+0.8
+0.7
phage
Bas21
N.D.
-0.1
+0.6
-0.0
+0.5
phage
Bas37
N.D.
-0.2
+0.3
+0.4
+0.5
carbon source
L-Rhamnose
N.D.
-0.1
-0.1
+0.8
+0.4
phage
TP7
N.D.
-0.5
+0.6
+0.2
+0.7
phage
Bas04
N.D.
-0.1
+0.1
+0.7
+0.5
phage
Bas22
N.D.
-0.0
+0.4
-0.3
+1.2
phage
Bas22
N.D.
+0.2
-0.0
+0.2
+1.2
carbon source
L-Arabinose
N.D.
-0.4
+0.2
+0.6
+1.1
carbon source
D-Glucose
N.D.
-0.4
+0.1
+1.4
+1.1
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