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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS02910 and ECOLIN_RS02915 are separated by 60 nucleotides
ECOLIN_RS02915 and ECOLIN_RS02920 overlap by 11 nucleotides
ECOLIN_RS02920 and ECOLIN_RS02925 overlap by 30 nucleotides
ECOLIN_RS02925 and ECOLIN_RS02930 overlap by 4 nucleotides
ECOLIN_RS02910: ECOLIN_RS02910 - chaperedoxin, at 598,601 to 599,455
_RS02910
ECOLIN_RS02915: ECOLIN_RS02915 - NADP(+)-dependent aldehyde reductase, at 599,516 to 600,325
_RS02915
ECOLIN_RS02920: ECOLIN_RS02920 - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 600,315 to 600,938
_RS02920
ECOLIN_RS02925: ECOLIN_RS02925 - putative ABC transporter ATP-binding protein YbbA, at 600,909 to 601,595
_RS02925
ECOLIN_RS02930: ECOLIN_RS02930 - putative ABC transporter permease subunit YbbP, at 601,592 to 604,006
_RS02930
Group
Condition
ECOLIN
_RS02910
ECOLIN
_RS02915
ECOLIN
_RS02920
ECOLIN
_RS02925
ECOLIN
_RS02930
carbon source
Sodium-DL-Lactate
-0.3
-3.1
+0.1
+0.0
+0.1
phage
TP7
-0.4
-2.5
+0.2
+0.5
+0.4
carbon source
L-Rhamnose
+1.1
-2.0
+0.7
+0.3
-0.2
phage
Bas68
-1.1
+2.5
+0.1
-0.5
-0.1
phage
Bas37
-1.0
+1.7
+0.0
+0.6
-0.2
phage
EV219
-1.1
+2.2
+0.3
-0.1
+0.2
phage
K25
-0.1
+3.1
-0.0
-0.4
+0.1
phage
Phi92
-0.2
+2.6
+0.4
+0.5
-0.6
phage
Bas52
-0.6
+3.0
+0.1
+0.2
+0.2
phage
RB51
-0.2
+3.0
-0.1
+0.4
+0.1
phage
CEV1
-0.5
+3.4
+0.1
+0.4
-0.2
phage
Bas21
-0.3
+3.1
+0.2
+0.6
-0.3
phage
Phi92
-0.5
+3.5
+0.3
+0.1
+0.1
phage
Bas05
-0.3
+3.6
+0.4
+0.3
-0.3
phage
K25
-0.2
+3.9
+0.0
+0.0
+0.1
phage
Bas48
-0.4
+3.3
+0.2
+0.6
+0.2
phage
Bas04
+0.0
+4.0
-0.1
+0.2
-0.1
phage
Bas04
-0.7
+4.2
+0.2
+0.4
+0.0
phage
Bas31
-0.2
+3.8
-0.3
+0.8
+0.1
phage
Bas27
+0.1
+3.3
+0.0
+0.5
+0.4
phage
Bas51
-0.4
+5.0
-0.1
+0.2
-0.3
phage
Bas52
+0.1
+4.5
-0.3
+0.1
-0.0
phage
Bas68
-0.3
+4.0
+0.1
+0.6
+0.1
phage
Bas22
+0.1
+3.5
+0.2
+0.1
+0.6
phage
RB68
+0.5
+4.4
+0.5
-0.5
+0.0
phage
Bas05
-0.5
+4.8
+0.2
+0.4
+0.0
phage
Bas63
-0.3
+5.1
-0.1
+0.1
+0.5
phage
K20
-0.0
+5.5
+0.2
+0.6
-0.2
no phage control
Control_Nissle
-0.1
+5.7
+0.0
+0.3
+0.4
no phage control
Control_Nissle
-0.1
+6.6
+0.4
-0.1
+0.0
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ECOLIN_RS02920
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