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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS02795 and ECOLIN_RS02800 are separated by 52 nucleotides
ECOLIN_RS02800 and ECOLIN_RS02805 overlap by 1 nucleotides
ECOLIN_RS02805 and ECOLIN_RS02810 are separated by 109 nucleotides
ECOLIN_RS02810 and ECOLIN_RS02815 are separated by 180 nucleotides
ECOLIN_RS02795: ECOLIN_RS02795 - DNA polymerase III subunit gamma/tau, at 571,957 to 573,888
_RS02795
ECOLIN_RS02800: ECOLIN_RS02800 - YbaB/EbfC family nucleoid-associated protein, at 573,941 to 574,270
_RS02800
ECOLIN_RS02805: ECOLIN_RS02805 - recombination mediator RecR, at 574,270 to 574,875
_RS02805
ECOLIN_RS02810: ECOLIN_RS02810 - molecular chaperone HtpG, at 574,985 to 576,859
_RS02810
ECOLIN_RS02815: ECOLIN_RS02815 - adenylate kinase, at 577,040 to 577,684
_RS02815
Group
Condition
ECOLIN
_RS02795
ECOLIN
_RS02800
ECOLIN
_RS02805
ECOLIN
_RS02810
ECOLIN
_RS02815
phage
P1vir
N.D.
N.D.
N.D.
-1.0
N.D.
carbon source
L-Rhamnose
N.D.
N.D.
N.D.
-0.5
N.D.
no phage control
Control_Nissle
N.D.
N.D.
N.D.
-0.3
N.D.
phage
Bas45
N.D.
N.D.
N.D.
-0.3
N.D.
carbon source
L-Rhamnose
N.D.
N.D.
N.D.
-0.2
N.D.
carbon source
Casamino-acids
N.D.
N.D.
N.D.
-0.2
N.D.
phage
Bas38
N.D.
N.D.
N.D.
-0.2
N.D.
phage
Bas38
N.D.
N.D.
N.D.
-0.1
N.D.
phage
Bas04
N.D.
N.D.
N.D.
+0.1
N.D.
phage
Bas44
N.D.
N.D.
N.D.
+0.1
N.D.
phage
Bas10
N.D.
N.D.
N.D.
+0.1
N.D.
phage
Bas48
N.D.
N.D.
N.D.
+0.1
N.D.
phage
Bas37
N.D.
N.D.
N.D.
+0.1
N.D.
phage
JK38
N.D.
N.D.
N.D.
+0.2
N.D.
phage
Bas04
N.D.
N.D.
N.D.
+0.2
N.D.
phage
Bas48
N.D.
N.D.
N.D.
+0.2
N.D.
phage
Bas31
N.D.
N.D.
N.D.
+0.2
N.D.
carbon source
L-Arabinose
N.D.
N.D.
N.D.
+0.3
N.D.
no phage control
Control_Nissle
N.D.
N.D.
N.D.
+0.3
N.D.
phage
Bas31
N.D.
N.D.
N.D.
+0.3
N.D.
phage
Bas37
N.D.
N.D.
N.D.
+0.3
N.D.
phage
EV219
N.D.
N.D.
N.D.
+0.3
N.D.
phage
Bas22
N.D.
N.D.
N.D.
+0.3
N.D.
phage
EV219
N.D.
N.D.
N.D.
+0.4
N.D.
phage
TP7
N.D.
N.D.
N.D.
+0.4
N.D.
phage
Bas21
N.D.
N.D.
N.D.
+0.4
N.D.
phage
Bas21
N.D.
N.D.
N.D.
+0.4
N.D.
phage
Bas22
N.D.
N.D.
N.D.
+0.4
N.D.
phage
JK38
N.D.
N.D.
N.D.
+0.5
N.D.
phage
TP7
N.D.
N.D.
N.D.
+0.5
N.D.
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