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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS02410 and ECOLIN_RS02415 are separated by 57 nucleotides
ECOLIN_RS02415 and ECOLIN_RS02420 are separated by 406 nucleotides
ECOLIN_RS02420 and ECOLIN_RS02425 are separated by 75 nucleotides
ECOLIN_RS02425 and ECOLIN_RS02430 are separated by 155 nucleotides
ECOLIN_RS02410: ECOLIN_RS02410 - phosphate response regulator transcription factor PhoB, at 491,956 to 492,645
_RS02410
ECOLIN_RS02415: ECOLIN_RS02415 - phosphate regulon sensor histidine kinase PhoR, at 492,703 to 493,998
_RS02415
ECOLIN_RS02420: ECOLIN_RS02420 - branched-chain amino acid transporter carrier protein BrnQ, at 494,405 to 495,724
_RS02420
ECOLIN_RS02425: ECOLIN_RS02425 - proline-specific permease ProY, at 495,800 to 497,173
_RS02425
ECOLIN_RS02430: ECOLIN_RS02430 - maltodextrin glucosidase, at 497,329 to 499,146
_RS02430
Group
Condition
ECOLIN
_RS02410
ECOLIN
_RS02415
ECOLIN
_RS02420
ECOLIN
_RS02425
ECOLIN
_RS02430
phage
Bas38
+0.1
-0.1
-1.0
+0.1
-0.1
phage
JK16
+0.2
-0.2
-0.4
+0.5
-0.4
phage
RB51
-0.1
-0.2
-0.7
+0.5
+0.2
carbon source
D-Glucose
-0.1
-0.3
+0.3
-0.3
+0.3
phage
Bas27
+0.2
-0.6
+0.0
+0.5
-0.1
phage
CEV1
+0.2
-0.3
-0.6
+0.4
+0.2
phage
RB68
-0.3
+0.1
+0.0
+0.7
-0.5
phage
Phi92
+0.2
-0.3
-0.4
+0.8
-0.2
carbon source
L-Arabinose
+0.5
-0.7
+0.0
-0.2
+0.5
phage
Bas22
-0.0
-0.2
-0.5
+0.5
+0.3
phage
Bas63
-0.2
-0.0
-0.5
+0.5
+0.3
phage
Bas21
+0.2
-0.2
-0.4
+0.7
-0.0
phage
Bas21
+0.0
+0.1
-0.6
+0.9
-0.0
phage
JK16
+0.4
-0.3
-0.4
+0.7
-0.0
phage
Bas52
-0.4
+0.0
-0.1
+0.5
+0.3
phage
CEV1
+0.2
+0.0
-0.9
+0.5
+0.5
phage
EV219
+0.2
-0.0
-0.4
+0.3
+0.3
phage
JK38
+0.2
-0.2
-0.4
+1.0
+0.0
phage
Bas05
+0.2
-0.1
-0.2
+0.8
-0.1
phage
Bas04
-0.0
-0.0
-0.2
+1.0
-0.1
phage
Bas04
+0.2
-0.1
-0.2
+0.7
+0.1
phage
Bas31
+0.2
+0.0
-0.3
+0.4
+0.5
no phage control
Control_Nissle
-0.3
+0.1
+0.1
+0.8
+0.1
phage
Bas05
+0.3
-0.1
-0.5
+0.9
+0.3
phage
Bas37
+0.1
-0.0
-0.2
+0.8
+0.2
phage
K25
+0.0
+0.0
-0.2
+0.6
+0.5
phage
Bas27
+0.4
-0.0
-0.2
+0.6
+0.3
phage
Bas37
+0.2
-0.0
+0.0
+0.7
+0.4
no phage control
Control_Nissle
+0.1
+0.1
+0.2
+0.9
+0.3
carbon source
L-Rhamnose
+0.1
-0.1
+0.9
+0.2
+1.1
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