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Gene
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Cofit
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS02370 and ECOLIN_RS02375 are separated by 71 nucleotides
ECOLIN_RS02375 and ECOLIN_RS02380 are separated by 147 nucleotides
ECOLIN_RS02380 and ECOLIN_RS31260 overlap by 4 nucleotides
ECOLIN_RS31260 and ECOLIN_RS02385 are separated by 80 nucleotides
ECOLIN_RS02370: ECOLIN_RS02370 - AroM family protein, at 482,221 to 482,898
_RS02370
ECOLIN_RS02375: ECOLIN_RS02375 - pyrimidine/purine nucleoside phosphorylase, at 482,970 to 483,254
_RS02375
ECOLIN_RS02380: ECOLIN_RS02380 - DUF2773 domain-containing protein, at 483,402 to 483,743
_RS02380
ECOLIN_RS31260: ECOLIN_RS31260 - hypothetical protein, at 483,740 to 483,820
_RS31260
ECOLIN_RS02385: ECOLIN_RS02385 - recombination-associated protein RdgC, at 483,901 to 484,812
_RS02385
Group
Condition
ECOLIN
_RS02370
ECOLIN
_RS02375
ECOLIN
_RS02380
ECOLIN
_RS31260
ECOLIN
_RS02385
carbon source
L-Rhamnose
-0.2
-2.4
-1.1
N.D.
-0.4
phage
Bas63
-0.6
-1.5
+0.0
N.D.
+0.2
phage
Bas44
-0.2
+0.2
-0.5
N.D.
-1.0
carbon source
Sodium-DL-Lactate
+0.2
-1.1
+0.0
N.D.
-0.4
phage
CEV1
+0.1
-1.3
+0.3
N.D.
-0.3
no phage control
Control_Nissle
+0.0
-2.0
+0.1
N.D.
+0.8
phage
Bas05
+0.2
-1.6
-0.1
N.D.
+0.5
phage
Bas27
-0.6
-0.9
+0.2
N.D.
+0.3
phage
Bas21
+0.2
-1.3
+0.0
N.D.
+0.3
phage
K20
+0.5
-0.8
+0.1
N.D.
-0.4
no phage control
Control_Nissle
+0.7
-1.1
+0.0
N.D.
-0.1
phage
Bas51
+0.7
-0.5
-0.3
N.D.
-0.4
phage
Bas27
-0.6
-0.3
+0.2
N.D.
+0.6
phage
RB51
-0.1
-0.9
+0.3
N.D.
+0.5
phage
Bas10
-0.0
-1.3
+0.3
N.D.
+0.8
phage
CEV1
-0.4
-0.5
+0.5
N.D.
+0.4
phage
Bas45
-0.7
+0.4
-0.5
N.D.
+0.9
phage
Bas31
-0.1
-1.1
+0.2
N.D.
+1.1
phage
JK38
+0.4
-0.9
+0.1
N.D.
+0.8
carbon source
D-Glucose
+0.6
-0.4
-0.4
N.D.
+0.8
phage
Bas38
-0.3
-0.8
-0.4
N.D.
+2.2
phage
JK38
-0.4
-0.4
+0.3
N.D.
+1.1
phage
Bas37
+0.1
-0.5
+0.1
N.D.
+1.1
phage
EV219
+0.4
-0.6
+0.3
N.D.
+0.8
phage
TP7
+0.2
-0.5
+0.2
N.D.
+1.2
phage
Bas22
+0.3
+0.4
-0.3
N.D.
+0.9
phage
TP7
+0.3
-0.3
+0.1
N.D.
+1.3
phage
Bas37
+0.2
-0.4
+0.1
N.D.
+1.6
carbon source
L-Rhamnose
+0.8
+0.4
+0.1
N.D.
+0.7
phage
Bas38
-0.0
-0.5
+0.3
N.D.
+2.3
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