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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS00995 and ECOLIN_RS01000 are separated by 36 nucleotides
ECOLIN_RS01000 and ECOLIN_RS01005 are separated by 12 nucleotides
ECOLIN_RS01005 and ECOLIN_RS01010 are separated by 97 nucleotides
ECOLIN_RS01010 and ECOLIN_RS01015 are separated by 56 nucleotides
ECOLIN_RS00995: ECOLIN_RS00995 - ribonuclease HII, at 212,141 to 212,737
_RS00995
ECOLIN_RS01000: ECOLIN_RS01000 - DNA polymerase III subunit alpha, at 212,774 to 216,256
_RS01000
ECOLIN_RS01005: ECOLIN_RS01005 - acetyl-CoA carboxylase carboxyl transferase subunit alpha, at 216,269 to 217,228
_RS01005
ECOLIN_RS01010: ECOLIN_RS01010 - lysine decarboxylase LdcC, at 217,326 to 219,467
_RS01010
ECOLIN_RS01015: ECOLIN_RS01015 - VOC family protein, at 219,524 to 219,913
_RS01015
Group
Condition
ECOLIN
_RS00995
ECOLIN
_RS01000
ECOLIN
_RS01005
ECOLIN
_RS01010
ECOLIN
_RS01015
phage
Bas45
N.D.
N.D.
N.D.
-1.2
-1.0
carbon source
D-Glucose
N.D.
N.D.
N.D.
-0.5
-0.8
phage
Bas44
N.D.
N.D.
N.D.
-0.9
-0.3
no phage control
Control_Nissle
N.D.
N.D.
N.D.
-0.1
-1.1
phage
Bas44
N.D.
N.D.
N.D.
-0.7
-0.5
carbon source
Sodium-DL-Lactate
N.D.
N.D.
N.D.
-1.5
+0.4
phage
Bas51
N.D.
N.D.
N.D.
+0.2
-1.2
phage
Bas68
N.D.
N.D.
N.D.
+0.0
-1.0
phage
Bas48
N.D.
N.D.
N.D.
-0.3
-0.5
carbon source
Casamino-acids
N.D.
N.D.
N.D.
-0.6
-0.3
phage
Bas52
N.D.
N.D.
N.D.
-0.5
-0.3
phage
Bas27
N.D.
N.D.
N.D.
-0.4
-0.3
phage
K20
N.D.
N.D.
N.D.
-0.6
+0.4
no phage control
Control_Nissle
N.D.
N.D.
N.D.
+0.4
-0.6
phage
Bas63
N.D.
N.D.
N.D.
+0.4
-0.5
phage
JK16
N.D.
N.D.
N.D.
+0.5
-0.4
phage
Bas22
N.D.
N.D.
N.D.
-0.4
+0.5
phage
K25
N.D.
N.D.
N.D.
-0.5
+0.8
phage
K20
N.D.
N.D.
N.D.
+0.7
-0.1
phage
Phi92
N.D.
N.D.
N.D.
+0.9
-0.4
phage
Bas37
N.D.
N.D.
N.D.
+0.8
-0.2
phage
TP7
N.D.
N.D.
N.D.
+0.5
+0.3
phage
Bas27
N.D.
N.D.
N.D.
+0.6
+0.2
phage
Bas10
N.D.
N.D.
N.D.
+0.6
+0.3
phage
P1vir
N.D.
N.D.
N.D.
+0.1
+0.9
phage
Bas10
N.D.
N.D.
N.D.
+0.6
+0.4
phage
CEV1
N.D.
N.D.
N.D.
+0.9
+0.1
phage
Bas21
N.D.
N.D.
N.D.
+0.7
+0.4
phage
Bas37
N.D.
N.D.
N.D.
+0.7
+0.4
phage
Bas05
N.D.
N.D.
N.D.
+1.0
+0.3
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