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Protein
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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS00555 and ECOLIN_RS32470 are separated by 24 nucleotides
ECOLIN_RS32470 and ECOLIN_RS00560 are separated by 155 nucleotides
ECOLIN_RS00560 and ECOLIN_RS00565 are separated by 34 nucleotides
ECOLIN_RS00565 and ECOLIN_RS00570 overlap by 11 nucleotides
ECOLIN_RS00555: ECOLIN_RS00555 - dephospho-CoA kinase, at 115,684 to 116,304
_RS00555
ECOLIN_RS32470: ECOLIN_RS32470 - protein YacM, at 116,329 to 116,373
_RS32470
ECOLIN_RS00560: ECOLIN_RS00560 - GMP reductase, at 116,529 to 117,572
_RS00560
ECOLIN_RS00565: ECOLIN_RS00565 - protein transport protein HofC, at 117,607 to 118,809
_RS00565
ECOLIN_RS00570: ECOLIN_RS00570 - type II secretion system protein GspE, at 118,799 to 120,184
_RS00570
Group
Condition
ECOLIN
_RS00555
ECOLIN
_RS32470
ECOLIN
_RS00560
ECOLIN
_RS00565
ECOLIN
_RS00570
carbon source
Casamino-acids
N.D.
N.D.
-0.9
-0.1
-0.4
phage
JK38
N.D.
N.D.
-0.4
-0.1
-0.6
phage
Bas38
N.D.
N.D.
-0.7
-0.2
+0.3
carbon source
Sodium-DL-Lactate
N.D.
N.D.
-0.5
-0.3
+0.4
phage
Bas52
N.D.
N.D.
+0.9
-0.1
-0.4
phage
Bas48
N.D.
N.D.
+1.0
-0.3
-0.3
carbon source
D-Glucose
N.D.
N.D.
+0.9
-0.2
-0.2
phage
Bas05
N.D.
N.D.
+1.2
-0.2
-0.5
phage
Phi92
N.D.
N.D.
+1.1
+0.1
-0.7
phage
K25
N.D.
N.D.
+1.0
-0.1
-0.2
phage
Bas31
N.D.
N.D.
+1.1
-0.1
-0.2
phage
K25
N.D.
N.D.
+1.1
-0.1
-0.2
phage
RB68
N.D.
N.D.
+1.4
-0.1
-0.5
phage
Bas68
N.D.
N.D.
+1.3
-0.1
-0.4
phage
Bas63
N.D.
N.D.
+1.2
+0.0
-0.4
phage
CEV1
N.D.
N.D.
+1.5
-0.1
-0.7
phage
Phi92
N.D.
N.D.
+1.0
-0.0
-0.2
phage
Bas68
N.D.
N.D.
+1.4
-0.4
-0.1
phage
Bas22
N.D.
N.D.
+1.5
-0.1
-0.3
phage
K20
N.D.
N.D.
+1.7
-0.3
-0.2
phage
Bas31
N.D.
N.D.
+1.8
-0.2
-0.2
phage
Bas52
N.D.
N.D.
+1.5
+0.1
-0.1
phage
Bas04
N.D.
N.D.
+1.6
-0.2
+0.1
no phage control
Control_Nissle
N.D.
N.D.
+2.0
-0.3
-0.2
phage
Bas22
N.D.
N.D.
+1.6
+0.2
-0.2
phage
Bas63
N.D.
N.D.
+1.8
+0.0
-0.2
phage
Bas05
N.D.
N.D.
+1.5
+0.2
-0.0
no phage control
Control_Nissle
N.D.
N.D.
+2.5
-0.2
-0.4
phage
Bas04
N.D.
N.D.
+1.8
+0.1
+0.2
phage
Bas51
N.D.
N.D.
+1.7
+0.2
+0.2
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