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Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS00365 and ECOLIN_RS00370 overlap by 25 nucleotides
ECOLIN_RS00370 and ECOLIN_RS00375 are separated by 163 nucleotides
ECOLIN_RS00375 and ECOLIN_RS00380 are separated by 88 nucleotides
ECOLIN_RS00380 and ECOLIN_RS00385 are separated by 125 nucleotides
ECOLIN_RS00365: ECOLIN_RS00365 - thiamine/thiamine pyrophosphate ABC transporter permease ThiP, at 75,891 to 77,501
_RS00365
ECOLIN_RS00370: ECOLIN_RS00370 - thiamine ABC transporter substrate binding subunit, at 77,477 to 78,460
_RS00370
ECOLIN_RS00375: ECOLIN_RS00375 - DNA-binding transcriptional regulator SgrR, at 78,624 to 80,279
_RS00375
ECOLIN_RS00380: ECOLIN_RS00380 - glucose uptake inhibitor SgrT, at 80,368 to 80,499
_RS00380
ECOLIN_RS00385: ECOLIN_RS00385 - 3-isopropylmalate dehydratase small subunit, at 80,625 to 81,230
_RS00385
Group
Condition
ECOLIN
_RS00365
ECOLIN
_RS00370
ECOLIN
_RS00375
ECOLIN
_RS00380
ECOLIN
_RS00385
carbon source
D-Glucose
-0.6
-0.7
-0.6
N.D.
-4.3
carbon source
D-Glucose
-0.4
-0.6
-0.3
N.D.
-4.6
carbon source
L-Arabinose
+0.3
-0.2
-0.4
N.D.
-4.0
carbon source
L-Arabinose
+0.4
-0.2
-0.2
N.D.
-3.9
carbon source
Sodium-DL-Lactate
-0.4
-0.4
+0.3
N.D.
-2.9
carbon source
Sodium-DL-Lactate
-0.2
-0.6
-0.1
N.D.
-2.5
carbon source
L-Rhamnose
+0.3
-0.8
-0.8
N.D.
-1.8
phage
Bas68
-0.6
-0.2
-0.1
N.D.
-1.2
no phage control
Control_Nissle
-0.1
-0.2
-0.5
N.D.
-0.7
phage
P1vir
-0.4
+0.2
-0.4
N.D.
-0.6
phage
Bas52
-0.3
-0.5
+0.1
N.D.
-0.6
phage
K20
-0.2
-0.2
+0.2
N.D.
-1.0
phage
Bas52
-0.4
-0.0
-0.4
N.D.
-0.3
phage
Bas21
-0.1
-0.1
-0.0
N.D.
-0.8
phage
Bas04
+0.1
-0.2
-0.6
N.D.
-0.2
phage
Bas63
-0.5
+0.1
+0.1
N.D.
-0.6
carbon source
Casamino-acids
-0.1
-0.7
-0.2
N.D.
+0.1
phage
Bas21
-0.4
+0.2
-0.2
N.D.
-0.5
phage
Bas45
-0.5
+0.0
+0.2
N.D.
-0.4
phage
JK16
-0.2
+0.4
-0.2
N.D.
-0.6
phage
RB68
-0.5
-0.3
+0.2
N.D.
+0.1
carbon source
Casamino-acids
+0.1
-0.4
-0.4
N.D.
+0.5
phage
Bas68
-0.4
-0.1
-0.2
N.D.
+0.5
phage
CEV1
-0.5
-0.1
+0.4
N.D.
+0.1
phage
Bas63
-0.1
-0.3
+0.4
N.D.
+0.2
phage
Phi92
-0.3
+0.4
+0.3
N.D.
-0.3
phage
Bas37
+0.1
+0.4
+0.1
N.D.
-0.4
phage
TP7
-0.1
+0.2
-0.3
N.D.
+0.4
phage
JK16
-0.3
+0.2
+0.3
N.D.
+0.7
carbon source
L-Rhamnose
+0.2
+0.3
-0.3
N.D.
+0.9
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