Fitness for 5 genes in Escherichia coli Nissle 1917

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500 ntECOLIN_RS00365 and ECOLIN_RS00370 overlap by 25 nucleotidesECOLIN_RS00370 and ECOLIN_RS00375 are separated by 163 nucleotidesECOLIN_RS00375 and ECOLIN_RS00380 are separated by 88 nucleotidesECOLIN_RS00380 and ECOLIN_RS00385 are separated by 125 nucleotides ECOLIN_RS00365: ECOLIN_RS00365 - thiamine/thiamine pyrophosphate ABC transporter permease ThiP, at 75,891 to 77,501 _RS00365 ECOLIN_RS00370: ECOLIN_RS00370 - thiamine ABC transporter substrate binding subunit, at 77,477 to 78,460 _RS00370 ECOLIN_RS00375: ECOLIN_RS00375 - DNA-binding transcriptional regulator SgrR, at 78,624 to 80,279 _RS00375 ECOLIN_RS00380: ECOLIN_RS00380 - glucose uptake inhibitor SgrT, at 80,368 to 80,499 _RS00380 ECOLIN_RS00385: ECOLIN_RS00385 - 3-isopropylmalate dehydratase small subunit, at 80,625 to 81,230 _RS00385
Group Condition ECOLIN_RS00365 ECOLIN_RS00370 ECOLIN_RS00375 ECOLIN_RS00380 ECOLIN_RS00385
carbon source D-Glucose -0.6 -0.7 -0.6 N.D. -4.3
carbon source D-Glucose -0.4 -0.6 -0.3 N.D. -4.6
carbon source L-Arabinose +0.3 -0.2 -0.4 N.D. -4.0
carbon source L-Arabinose +0.4 -0.2 -0.2 N.D. -3.9
carbon source Sodium-DL-Lactate -0.4 -0.4 +0.3 N.D. -2.9
carbon source Sodium-DL-Lactate -0.2 -0.6 -0.1 N.D. -2.5
carbon source L-Rhamnose +0.3 -0.8 -0.8 N.D. -1.8
phage Bas68 -0.6 -0.2 -0.1 N.D. -1.2
no phage control Control_Nissle -0.1 -0.2 -0.5 N.D. -0.7
phage P1vir -0.4 +0.2 -0.4 N.D. -0.6
phage Bas52 -0.3 -0.5 +0.1 N.D. -0.6
phage K20 -0.2 -0.2 +0.2 N.D. -1.0
phage Bas52 -0.4 -0.0 -0.4 N.D. -0.3
phage Bas21 -0.1 -0.1 -0.0 N.D. -0.8
phage Bas04 +0.1 -0.2 -0.6 N.D. -0.2
phage Bas63 -0.5 +0.1 +0.1 N.D. -0.6
carbon source Casamino-acids -0.1 -0.7 -0.2 N.D. +0.1
phage Bas21 -0.4 +0.2 -0.2 N.D. -0.5
phage Bas45 -0.5 +0.0 +0.2 N.D. -0.4
phage JK16 -0.2 +0.4 -0.2 N.D. -0.6
phage RB68 -0.5 -0.3 +0.2 N.D. +0.1
carbon source Casamino-acids +0.1 -0.4 -0.4 N.D. +0.5
phage Bas68 -0.4 -0.1 -0.2 N.D. +0.5
phage CEV1 -0.5 -0.1 +0.4 N.D. +0.1
phage Bas63 -0.1 -0.3 +0.4 N.D. +0.2
phage Phi92 -0.3 +0.4 +0.3 N.D. -0.3
phage Bas37 +0.1 +0.4 +0.1 N.D. -0.4
phage TP7 -0.1 +0.2 -0.3 N.D. +0.4
phage JK16 -0.3 +0.2 +0.3 N.D. +0.7
carbon source L-Rhamnose +0.2 +0.3 -0.3 N.D. +0.9
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