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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS00350 and ECOLIN_RS00355 are separated by 154 nucleotides
ECOLIN_RS00355 and ECOLIN_RS00360 are separated by 113 nucleotides
ECOLIN_RS00360 and ECOLIN_RS00365 overlap by 17 nucleotides
ECOLIN_RS00365 and ECOLIN_RS00370 overlap by 25 nucleotides
ECOLIN_RS00350: ECOLIN_RS00350 - hypothetical protein, at 73,754 to 74,176
_RS00350
ECOLIN_RS00355: ECOLIN_RS00355 - DedA family protein, at 74,331 to 75,095
_RS00355
ECOLIN_RS00360: ECOLIN_RS00360 - thiamine ABC transporter ATP-binding protein ThiQ, at 75,209 to 75,907
_RS00360
ECOLIN_RS00365: ECOLIN_RS00365 - thiamine/thiamine pyrophosphate ABC transporter permease ThiP, at 75,891 to 77,501
_RS00365
ECOLIN_RS00370: ECOLIN_RS00370 - thiamine ABC transporter substrate binding subunit, at 77,477 to 78,460
_RS00370
Group
Condition
ECOLIN
_RS00350
ECOLIN
_RS00355
ECOLIN
_RS00360
ECOLIN
_RS00365
ECOLIN
_RS00370
phage
P1vir
+0.2
-1.1
-0.7
-0.4
+0.2
phage
Bas22
-0.1
-0.5
-0.9
-0.4
+0.0
phage
Bas52
+0.0
-0.6
-0.5
-0.3
-0.5
carbon source
L-Rhamnose
+0.0
-0.4
-1.9
+0.2
+0.3
phage
Bas22
+0.0
-0.2
-1.0
-0.3
-0.2
phage
K20
-0.4
+0.1
-0.9
-0.2
-0.2
phage
Bas68
-0.0
-0.3
-0.3
-0.6
-0.2
phage
Bas45
-0.2
-0.4
-0.3
-0.5
+0.0
carbon source
Sodium-DL-Lactate
-0.0
-0.1
-0.3
-0.4
-0.4
carbon source
D-Glucose
-0.3
-0.2
+0.5
-0.6
-0.7
phage
K25
+0.1
+0.1
-1.0
-0.3
+0.0
phage
RB51
+0.2
+0.1
-1.2
-0.2
-0.1
phage
Bas48
-0.1
-0.1
-0.9
-0.3
+0.2
phage
Bas52
+0.2
-0.8
-0.2
-0.4
-0.0
carbon source
D-Glucose
-0.2
+0.3
-0.1
-0.4
-0.6
phage
K25
+0.3
-0.3
-0.5
-0.2
-0.2
phage
JK16
-0.1
-0.1
-0.9
-0.2
+0.4
phage
Bas68
+0.2
+0.2
-0.7
-0.4
-0.1
phage
Phi92
+0.1
+0.0
-1.0
-0.3
+0.4
carbon source
L-Rhamnose
+0.1
+0.2
-0.4
+0.3
-0.8
phage
Bas51
+0.4
-0.3
-0.9
-0.1
+0.2
carbon source
Sodium-DL-Lactate
+0.1
+0.3
-0.2
-0.2
-0.6
carbon source
Casamino-acids
-0.2
+0.3
+0.3
-0.1
-0.7
phage
Bas21
+0.1
-0.6
+0.4
-0.1
-0.1
phage
Bas44
+0.4
+0.1
-0.1
-0.2
-0.5
no phage control
Control_Nissle
+0.3
+0.1
-0.5
-0.3
+0.2
carbon source
Casamino-acids
-0.3
+0.3
+0.4
+0.1
-0.4
carbon source
L-Arabinose
-0.3
+0.5
+0.2
+0.3
-0.2
carbon source
L-Arabinose
+0.1
+0.3
+0.3
+0.4
-0.2
phage
RB51
+0.2
+0.3
+0.4
-0.1
+0.5
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